PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618497.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 165aa    MW: 17989 Da    PI: 6.776
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618497.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1383.7e-122568245
                    XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                    ++ ++ +rk++NRe+ArrsR RK++ ++ L+  ++ L +eN+  
  XP_013618497.1 25 SDERKRKRKESNRESARRSRMRKQKHLDDLTAQIAHLREENSHI 68
                    5667899**********************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-112374No hitNo description
SMARTSM003381.7E-182488IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.8522689IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.5E-122880No hitNo description
PfamPF001702.1E-92868IPR004827Basic-leucine zipper domain
CDDcd147023.42E-212979No hitNo description
PROSITE patternPS0003603146IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MNKTEMGSPA SGNCSSGLQN YGSESDERKR KRKESNRESA RRSRMRKQKH LDDLTAQIAH  60
LREENSHIVA GISVTTQQYV TIEGENSVLR AQFLELNQRL NSLNEIVEIA GGFWMETGQG  120
GGVIGYGGGG GGFYDGVMNP LNLGFYNQTL MASASTVSAD VFNCC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732RKRKRK
22733RKRKRKE
32748RKRKRKESNRESARRSRMRKQK
44047RRSRMRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618497.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618497.11e-120PREDICTED: ocs element-binding factor 1-like
SwissprotC0Z2L57e-76BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0D3AQP21e-119A0A0D3AQP2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DVF71e-119A0A3P6DVF7_BRAOL; Uncharacterized protein
STRINGBo2g083760.11e-119(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.14e-52basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]