PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013618407.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 334aa MW: 37745.7 Da PI: 8.0066 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.7 | 4.8e-32 | 24 | 78 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl XP_013618407.1 24 KPRLKWTCELHHRFIEAVNQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRL 78 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-28 | 22 | 78 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-15 | 23 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.8E-22 | 24 | 79 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.9E-6 | 26 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.5E-22 | 126 | 172 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MESNTNNGNN HKAKVSLVLS TDAKPRLKWT CELHHRFIEA VNQLGGPNKA TPKGLMKAME 60 IPGLTLYHLK SHLQKYRLGK SLKFDDNKLE VSSASETQEA ESKNDSGDFR GNVNQENNDP 120 ANEGLKITEA LQLQMEVQKK LHEQIEVQRH LQVKIEAQGK YLQSVLMKAQ QTLAGYTSAS 180 LGMDFARSEL SRLASMMNPS SSFSELTQVE DYEEEGFLWC KKTENRGIRQ PRRSVESSLT 240 SSESSETKLN NNNEERKSME LPLMEIKSEV MTAKKTKRSL NDVLCVEHQP LKKRDFGVDD 300 DDEQHLRLSL NSYKKVMGTC PNMDLGLSGK KTLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-19 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-19 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-19 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-19 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-19 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-19 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-19 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-19 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013618407.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618407.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1 | ||||
Swissprot | F4I274 | 1e-167 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A0D3APC1 | 0.0 | A0A0D3APC1_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g064200.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3878 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 1e-165 | G2-like family protein |
Publications ? help Back to Top | |||
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