PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618346.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family E2F/DP
Protein Properties Length: 282aa    MW: 31561.2 Da    PI: 10.1033
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.68e-2776159271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                 d+kn+rRR+YD+lNVL+a+++i k +k+ei+w+g
  XP_013618346.1  76 TGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfalpnndgtsppdqqqyDEKNIRRRVYDALNVLMAMDIICK-DKKEIQWRG 159
                     689********...*****999********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-4571165IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-3375159IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.2E-2478159IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.07E-2178160IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF1440743.14E-19166232No hitNo description
SMARTSM011387.9E-11166244IPR014889Transcription factor DP, C-terminal
PfamPF087815.0E-18167231IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MTTTTTTGSN SNHNNPSTSG SMGSPSTTVA TTSASDSAFI QLNSSDIQGD DAASQGSGKK  60
KKKKKRWQRA SGPDKTGRGL RQFSMKVCEK VESKGRTTYN EVADELVAEF ALPNNDGTSP  120
PDQQQYDEKN IRRRVYDALN VLMAMDIICK DKKEIQWRGL PRTSLSDIDE LKAERLSLRN  180
RIEKKTAYSQ ELEEQYVGLQ NLIRRNEHLY SSGNAPSAGV ALPFILVQVD TSSCDRRSGN  240
IRRHAARPFR FQQHSIRAPR RHLCPQDNEI LRSATTVEQR SQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3769164193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15965KKKKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.140290.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618346.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937330.0AB493733.1 Arabidopsis thaliana At5g03415 mRNA for hypothetical protein, partial cds, clone: RAAt5g03415.
GenBankAJ2945320.0AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene).
GenBankAK2281480.0AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08.
GenBankAY0860180.0AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618346.10.0PREDICTED: transcription factor-like protein DPB isoform X3
SwissprotQ9FNY21e-123DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A3P6D5G91e-164A0A3P6D5G9_BRAOL; Uncharacterized protein
STRINGBo2g004050.11e-154(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-117Transcription factor DP