PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013618288.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 289aa MW: 31711.2 Da PI: 4.8234 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 53.9 | 3.8e-17 | 131 | 179 | 3 | 51 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ++kr rr+++NR++ArrsRqRK+++++ Le v++L++ N++L k+l XP_013618288.1 131 DVKRIRRMYSNRISARRSRQRKQEQLADLESQVDSLKGVNSTLYKQLID 179 68*****************************************988755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 7.3E-13 | 124 | 184 | No hit | No description |
SMART | SM00338 | 1.7E-14 | 129 | 193 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.358 | 131 | 177 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.34E-12 | 132 | 182 | No hit | No description |
Pfam | PF00170 | 4.4E-14 | 132 | 177 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 6.98E-18 | 134 | 185 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 136 | 151 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MDGHTAKDIG MKKSASELAL QELLTKLLSR QESILDTSPL DPSFDFMNWD YTCELRDSLL 60 KSESLTPAGL FLDAQSSICE NLSADSPVSA NKPEAKRAAH GTVSVYTDDQ SDEEDAETEA 120 GQSEMTNDPN DVKRIRRMYS NRISARRSRQ RKQEQLADLE SQVDSLKGVN STLYKQLIDA 180 TQQFRTAGTN NRVLKSDVET LRVKVKLAED LIARGSLTSS LNQILQTHLS PPQYSINSLH 240 YTGNNTSPAI TVHSDQSLFP GITISGQNSS PGLGNVSSEA VSCVSDIWP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 151 | RRSRQRK |
2 | 145 | 152 | RRSRQRKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Present in silique vasculature and funiculi. In the anthers, restricted to the connective tissue at pre- and post-dehiscence stages and detected in the vascular tissue of the stamen filament. {ECO:0000269|PubMed:18841482}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, stems, young leaves, and flowers, mostly in vascular tissues (e.g. phloem). {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013618288.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618288.1 | 0.0 | PREDICTED: basic leucine zipper 9-like | ||||
Swissprot | Q9FUD3 | 1e-164 | BZIP9_ARATH; Basic leucine zipper 9 | ||||
TrEMBL | A0A0D3AXT6 | 0.0 | A0A0D3AXT6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DI48 | 0.0 | A0A3P6DI48_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g159200.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6370 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 1e-161 | basic leucine zipper 9 |
Publications ? help Back to Top | |||
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