PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013618267.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 300aa MW: 33860 Da PI: 5.0635 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.4 | 2.3e-12 | 187 | 230 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++P+ + K++ +iL A++Y+k+L XP_013618267.1 187 LMAERRRRKRLNDRLSMLRSIVPNiS------KMDRTSILGDAIDYMKEL 230 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.974 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.85E-17 | 184 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-10 | 187 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-13 | 187 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.21E-5 | 188 | 230 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.1E-17 | 188 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 300 aa Download sequence Send to blast |
MELSTQMNVF KELLVPTKQE TTDNYNYNSN INNLSFNGGF DHHQLFSNGW NIDYLCFNNE 60 EEDENTLLYS SSFMDLISQP PPLLLHQTPP LPPPSSSSPP LISPTASTFD DPFLEALQEI 120 IDSSSSSPPV MLPTSQEESF INHSSYPSPL VESDQSKSFS VGYCGGVVET TNKKKSKKLE 180 GQPSKNLMAE RRRRKRLNDR LSMLRSIVPN ISKMDRTSIL GDAIDYMKEL LDKINKLQDE 240 EQELGVSNSS HHSKLFGDIK DLNTNEPLVR NSPKVGETKI LGLRYVAPPN RDCFYQLLTH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
5gnj_B | 3e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
5gnj_E | 3e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
5gnj_F | 3e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
5gnj_G | 3e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
5gnj_I | 3e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
5gnj_M | 3e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
5gnj_N | 3e-13 | 182 | 255 | 5 | 76 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 172 | 194 | KKKSKKLEGQPSKNLMAERRRRK |
2 | 189 | 196 | ERRRRKRL |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013618267.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618267.1 | 0.0 | PREDICTED: transcription factor bHLH93-like isoform X2 | ||||
Swissprot | Q9LSL1 | 1e-129 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A0D3AYZ6 | 0.0 | A0A0D3AYZ6_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g168250.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65640.2 | 1e-133 | beta HLH protein 93 |
Publications ? help Back to Top | |||
---|---|---|---|
|