PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013618241.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 285aa MW: 32332.9 Da PI: 5.3995

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013618241.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.1	1.5e-18	78	131	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA+ lgL+ rq+ +WFqNrRa++k XP_013618241.1 78 KKRRLNMEQVKTLEKNFELGNKLDPERKMQLARALGLQPRQIAIWFQNRRARWK 131 456899***********************************************9 PP
2	HD-ZIP_I/II	132.4	1.6e-42	77	169	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqvk+LE++Fe +kL+perK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr++d+lk+en++L++++++L++e+++ XP_013618241.1 77 EKKRRLNMEQVKTLEKNFELGNKLDPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDSLKAENDHLQTHNQNLQAEIMS 169 69**************************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.01E-20	68	135	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.313	73	133	IPR001356	Homeobox domain
SMART	SM00389	9.9E-19	76	137	IPR001356	Homeobox domain
Pfam	PF00046	6.7E-16	78	131	IPR001356	Homeobox domain
CDD	cd00086	9.93E-17	78	134	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-19	80	140	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	104	113	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	108	131	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	113	129	IPR000047	Helix-turn-helix motif
CDD	cd14686	0.0038	126	167	No hit	No description
Pfam	PF02183	8.3E-17	133	174	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MSCNNGMSFF PSNFMIQTSY EDLPPSLSPL LPSCSIPQDL HGFASFLGKR SPVEGLEAGN 60 IMNGEEDYSD DGSQMGEKKR RLNMEQVKTL EKNFELGNKL DPERKMQLAR ALGLQPRQIA 120 IWFQNRRARW KTKQLEKDYD TLKRQFDSLK AENDHLQTHN QNLQAEIMSL RNREQTESIN 180 LNKETEGSCS NRSDNSSDNF RLDISTAVPS VDSTITGGHP PAPQTVGRHF FPPATATTTT 240 TTMQFFQNSS SGQSMVKEEN SISNMFCAMD DHSGFWPWLD QQQYN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	133	RRARWKTKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013618241.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353311	0.0	AK353311.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-O11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013618241.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8LC03	0.0	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A0D3APF8	0.0	A0A0D3APF8_BRAOL; Uncharacterized protein
STRING	Bo2g064570.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2633	27	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-169	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]