PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618178.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 324aa    MW: 36843.9 Da    PI: 8.4078
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618178.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.61.3e-4189164277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     Cqv gC++dls  k+yh+rh+vC++hsk++vv+vsg+eqrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk++
  XP_013618178.1  89 CQVYGCNMDLSFSKDYHKRHRVCDAHSKSSVVIVSGVEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKPS 164
                     **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-3283150IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.55686163IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.58E-3987166IPR004333Transcription factor, SBP-box
PfamPF031101.2E-3189162IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDSWSYGRSV FLPNGTIAEN QSSMPGFEME TSDGFITKVA SSSYVEENQS SNLSRIDFKF  60
RIYENHDGTS SLRAKKTRAS NSCSQSPLCQ VYGCNMDLSF SKDYHKRHRV CDAHSKSSVV  120
IVSGVEQRFC QQCSRFHFLS EFDDGKRSCR RRLAGHNERR RKPSFYFLPE SFPGSFLYRV  180
MDEHDHRASR LVSFKDEPKP AMEASGVSYI WDLQEAVPRS TCALSLLSAQ SQQHLSANNP  240
NKSFSITQPC QNLNHSTGDY HQMQPLRIDP GKKTKSVTSS SSCNGNGSST VDLLQLSSHL  300
QRIQQQQRTF TDDVKQEYNE LYFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-30881621084squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618178.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892988e-90AC189298.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB028I01, complete sequence.
GenBankAC1894588e-90AC189458.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073F16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618178.10.0PREDICTED: squamosa promoter-binding-like protein 6 isoform X3
SwissprotQ94JW81e-139SPL6_ARATH; Squamosa promoter-binding-like protein 6
TrEMBLA0A0D3AP840.0A0A0D3AP84_BRAOL; Uncharacterized protein
STRINGBo2g062840.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-119SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]