PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013618146.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 280aa MW: 30334.9 Da PI: 8.8367 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 6 | 51 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v ++G+++W+ I++ ++ gR++k+c++rw + XP_013618146.1 6 KGPWSPEEDDQLRRLVVKYGPRNWTVISKSIP-GRSGKSCRLRWCNQ 51 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.1e-17 | 60 | 102 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEd +++a++q+G++ W+tIar ++ gRt++ +k++w++ XP_013618146.1 60 PFSAEEDATIARAHEQFGNK-WATIARLLN-GRTDNAVKNHWNST 102 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.134 | 1 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-31 | 3 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-17 | 5 | 54 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-18 | 6 | 51 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 7 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.55E-16 | 8 | 50 | No hit | No description |
SMART | SM00717 | 3.5E-14 | 57 | 105 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.154 | 58 | 107 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-22 | 59 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.54E-11 | 60 | 103 | No hit | No description |
Pfam | PF00249 | 2.4E-14 | 60 | 102 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MADRIKGPWS PEEDDQLRRL VVKYGPRNWT VISKSIPGRS GKSCRLRWCN QLSPQVEHRP 60 FSAEEDATIA RAHEQFGNKW ATIARLLNGR TDNAVKNHWN STLKRKCGGF DHRYDASAVD 120 HRPAKRSVSD GGPPVANGLY MSPGSPTGSD VSDWSTIPVL PSVGLFRPVP RAGGPLPTET 180 SSSSGDPATS LSLSLPGADA SEESTNINTL SRRQNKNAES FLPFSGGFRG AIEEMGKSFA 240 GDGGSEFMVM VQEMIKAEVR SYMAEMQRDH SGIGGGVFVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-39 | 5 | 107 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-39 | 5 | 107 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-39 | 5 | 107 | 3 | 105 | C-Myb DNA-Binding Domain |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during very late stages of embryogenesis. Later, its expression follows a development dependent gradient in successive leaves. {ECO:0000269|PubMed:9678577}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, inflorescence, and flowers (including stamen, floral nectar, carpel, petal and sepal), mostly in vasculatures and stomata. {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:9678577}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:23067202, PubMed:23603962). Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA (PubMed:18162593, PubMed:9678577). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB44 is enhanced by direct interaction between MYB44 and PYL8 (PubMed:24894996). Transcriptional activator of WRKY70 by direct binding to its promoter region, especially at 5'-TAACNG-3' and 5'-CNGTTA-3' symmetric motifs (PubMed:23067202, PubMed:23603962). Activates salicylic acid (SA)- mediated defenses and subsequent resistance to biotrophic pathogen P.syringae pv. tomato DC3000, but represses jasmonic acid (JA)-mediated defenses responses against the necrotrophic pathogen A.brassicicola (PubMed:23067202). {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202, ECO:0000269|PubMed:23603962, ECO:0000269|PubMed:24894996, ECO:0000269|PubMed:9678577}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013618146.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought, cold, high salinity, cadmium (CdCl(2)), salicylic acid (SA), jasmonate (JA), ethylene, gibberellic acid (GA), and ABA (PubMed:16463103, PubMed:18162593, PubMed:23067202). The induction by JA is COI1-dependent (PubMed:23067202). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618146.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | Q9FDW1 | 1e-154 | MYB44_ARATH; Transcription factor MYB44 | ||||
TrEMBL | A0A0D3AYW7 | 0.0 | A0A0D3AYW7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DUP5 | 0.0 | A0A3P6DUP5_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g167960.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 1e-156 | myb domain protein r1 |