PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013618061.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 391aa MW: 43513.6 Da PI: 6.9994

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013618061.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107	9.2e-34	211	269	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+ gC vkk+vers++dp++v +tYeg+H+h+ XP_013618061.1 211 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHP 269 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-34	196	271	IPR003657	WRKY domain
SuperFamily	SSF118290	4.97E-30	204	271	IPR003657	WRKY domain
PROSITE profile	PS50811	32.73	206	271	IPR003657	WRKY domain
SMART	SM00774	5.5E-41	211	270	IPR003657	WRKY domain
Pfam	PF03106	2.6E-27	212	269	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MGKKIKEDHH QEQQKEEPNS TKNTETTASS STHMMNLITT SDHHQMELAG NNMNLSSIFD 60 IPISSPFAYS YFEDHSSNNP YSFLDLLRQD QHQFASSSNS SSFSINAFPL QNNTNHIFTD 120 LPLSQPVTTK DESSEVVSTT PTSPNSTSFS SSSNEAANDN INKEVTVKDQ EDGDQHGPKG 180 TKPQLKAKKK QQKKGREARF AFLTKSDIDN LDDGYRWRKY GQKAVKNSPY PRSYYRCTTV 240 GCGVKKRVER SSDDPSIVMT TYEGQHTHPF PMTPRGHIGM LTSPILDHGA TTASSSSSFS 300 IPQPRYLLSQ HHQPYNIMYN NSLSMINRSS SSDGSFVNPG SSSFHGFGCD MSQASTSTTS 360 AIRDHGLLQD ILPSQIRSDT INTRTNEEDN K

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MGKKIKEDHH QEQQKEEPNS TKNTETTASS STHMMNLITT SDHHQMELAG NNMNLSSIFD  60
IPISSPFAYS YFEDHSSNNP YSFLDLLRQD QHQFASSSNS SSFSINAFPL QNNTNHIFTD  120
LPLSQPVTTK DESSEVVSTT PTSPNSTSFS SSSNEAANDN INKEVTVKDQ EDGDQHGPKG  180
TKPQLKAKKK QQKKGREARF AFLTKSDIDN LDDGYRWRKY GQKAVKNSPY PRSYYRCTTV  240
GCGVKKRVER SSDDPSIVMT TYEGQHTHPF PMTPRGHIGM LTSPILDHGA TTASSSSSFS  300
IPQPRYLLSQ HHQPYNIMYN NSLSMINRSS SSDGSFVNPG SSSFHGFGCD MSQASTSTTS  360
AIRDHGLLQD ILPSQIRSDT INTRTNEEDN K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-27	204	271	10	77	Probable WRKY transcription factor 4
2lex_A	2e-27	204	271	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013618061.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430059	0.0	KF430059.1 Brassica rapa WRKY transcription factor 48 (WRKY48) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013618061.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	1e-165	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A0D3AX35	0.0	A0A0D3AX35_BRAOL; Uncharacterized protein
STRING	Bo2g151740.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-135	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]