PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013618059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 288aa MW: 31551 Da PI: 6.8562 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.6 | 1.5e-17 | 214 | 249 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cgt++ Tp++Rrgp+g++tLCnaCGl+++ kg XP_013618059.1 214 CRHCGTSEksTPMMRRGPEGPRTLCNACGLMWANKG 249 *********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.134 | 70 | 105 | IPR010399 | Tify domain |
SMART | SM00979 | 1.9E-11 | 70 | 105 | IPR010399 | Tify domain |
Pfam | PF06200 | 9.4E-11 | 73 | 104 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.5E-15 | 138 | 180 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.066 | 138 | 180 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.222 | 208 | 256 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.1E-11 | 208 | 261 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-13 | 211 | 267 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-15 | 213 | 255 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.1E-15 | 214 | 249 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 214 | 241 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.12E-14 | 214 | 261 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MDDDLHGNNG GMHNGGGVQD PNHSMHVQYD HRGMMDEQHA DDVMNEGLEA DIPSHLGNTS 60 DHRGEVVDRG SENGDQLTLS FQGQVYVFDR VLPEKVQAVL LLLGGREVPN TVPTTVGSPH 120 QNNRGLSGTP QRFSAPQRQA SLLRFREKRK GRNFDKTIRY TVRKEVALRM QRKKGQFTSA 180 KSSNEDSASN GSDWGSGQSW ALEGTETQKP EALCRHCGTS EKSTPMMRRG PEGPRTLCNA 240 CGLMWANKGA LRDLSKAPPP PTAQNLPANK IDESILEAEL AGDISNSQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013618059.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618059.1 | 0.0 | PREDICTED: GATA transcription factor 24-like isoform X2 | ||||
Swissprot | Q8GXL7 | 1e-160 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A398AXB5 | 0.0 | A0A398AXB5_BRACM; Uncharacterized protein | ||||
STRING | Bra023900.1-P | 0.0 | (Brassica rapa) | ||||
STRING | Bo1g108240.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-160 | ZIM-like 1 |
Publications ? help Back to Top | |||
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