PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013617959.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 903aa    MW: 94459.5 Da    PI: 6.9267
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013617959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like591e-1886136455
         G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     ++Wt++L ++F  a+e++ G +kAtPk+il++m+ k+Lt++h++S LQkYR 
  XP_013617959.1  86 IKWTTTLENEFSMAIEHI-GVHKATPKKILKFMNQKSLTRAHIASKLQKYRR 136
                     79****************.9*******************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-1182140IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-1882140IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-1686136IPR006447Myb domain, plants
SMARTSM007104600304329IPR006626Parallel beta-helix repeat
SMARTSM007109300389427IPR006626Parallel beta-helix repeat
SMARTSM00710190441468IPR006626Parallel beta-helix repeat
SMARTSM007102900500522IPR006626Parallel beta-helix repeat
SMARTSM007102700527548IPR006626Parallel beta-helix repeat
SMARTSM007104300571593IPR006626Parallel beta-helix repeat
SMARTSM007102700620641IPR006626Parallel beta-helix repeat
SMARTSM007104300664686IPR006626Parallel beta-helix repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MKNEIEQESL SCGAPCFVRK PIKPNDPNNM WKHALDHRIN DGSIQDDTDG SEKIQDDTDG  60
SIQEKTSSSD PCDGDSSSKT TKRVMIKWTT TLENEFSMAI EHIGVHKATP KKILKFMNQK  120
SLTRAHIASK LQKYRRNLKR DEEQRTKERI ATHSTLSSEG GYINPQHSYN YNTRLGNNNL  180
FNVQPGYGLG QSSFMGNNNA GLHDSLNCMN RRPTYDLSQT GSKLLPMRGN LGFQNGMLPV  240
KEEWRSIPGT SQAPRFGQYG TTSNALGMNY NPTTGTTGSN NYVGIRGDEN GDLVGLGGLR  300
VNGNGNGSFS GARVHGTGSG SLQGMSVYGN GHGSSLGGRG VHGTDNGSLE GKRVPGNGHG  360
SLGGRGVHGT GNGSLKGIRV PGGRGVHGTG NGSIEGIRVP GNGHGSLGGR GVHGTGNGSL  420
EGIRVPGNGH GSLGGRGVHG TGNGSLEGIR VHGAGNGHGS LGGIRIHGND NGIRVHDTSN  480
GYGSFGGVKV HGTNISYDSS DGIIVHGNSN SNDSLGGIRV HGAGNGNGHG SLGGIRIHGN  540
DNGIRVHDTS NGYGSFGGVK VHGTGNSNGS PDGIIVHGNS NSNDSLGGIR VHGTDSVGGI  600
RVHGTDAGSV GGRNVHGTSN GHGSLGGIRI HGNDNGIRVH DTSNGYGSFG GVKVHGTGNS  660
NGSPDGIIVH GNSNSNDSLG GIRVHGTDSV GGIRVHGTDA GSAGGGNVHG TSNGNGSLGV  720
NFGMNWNFNN NNMSNHGSST PMFPSALSSF LGNKDQAQNN LIAQTGGVIP ALEKPKMFSD  780
HHDINEVFSD TNNSQFHQNQ HQGNLTGVNF EAPTAYPLED ISSWSFNDGT NNEEMLDTLV  840
ANLEMYLPTQ DMNITNQGNN HEEMFNSLAA NPEMHFPTQD MNITNQDCDD EDFMDYLIDP  900
DMN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013617959.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013617959.10.0PREDICTED: filaggrin-2-like
TrEMBLA0A3N6RD270.0A0A3N6RD27_BRACR; Uncharacterized protein
STRINGBo3g108010.11e-128(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1654279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.11e-25response regulator 21