PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013617898.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 100aa    MW: 11494.3 Da    PI: 10.018
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013617898.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.21.9e-17952144
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    ++i n+s r+ tf kR++ +lKKA+ELS+LC+++v+ +i s ++
  XP_013617898.1  9 EPITNSSARNQTFRKRKKCLLKKANELSTLCGVKVCAVINSCDN 52
                    5799***********************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.54149IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-17161IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-22391IPR002100Transcription factor, MADS-box
PfamPF003193.7E-181152IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MPKGRIKIEP ITNSSARNQT FRKRKKCLLK KANELSTLCG VKVCAVINSC DNTEPPEFWP  60
SKEGAEKVHS AFMGVLPEER CKRMYDQERI QKGQDPERTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125RKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not present in female gametophyte before fertilization. Expressed in pollen tube and at the micropylar pole of pollinated seeds. {ECO:0000269|PubMed:15619622}.
UniprotTISSUE SPECIFICITY: Male gametophyte, embryo and endosperm. {ECO:0000269|PubMed:12815071, ECO:0000269|PubMed:15619622}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of gametophytes and seeds. {ECO:0000269|PubMed:12815071}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013617898.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by MEA, FIS2 and FIE in seeds, and by PKL after germination. {ECO:0000269|PubMed:12815071, ECO:0000269|PubMed:16359393}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013617898.11e-69PREDICTED: MADS-box transcription factor PHERES 1-like
SwissprotO808056e-20PHE1_ARATH; MADS-box transcription factor PHERES 1
TrEMBLA0A0D3AXF03e-68A0A0D3AXF0_BRAOL; Uncharacterized protein
STRINGBo2g155860.15e-69(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.13e-22M-type_MADS family protein
Publications ? help Back to Top
  1. Raissig MT,Bemer M,Baroux C,Grossniklaus U
    Genomic imprinting in the Arabidopsis embryo is partly regulated by PRC2.
    PLoS Genet., 2013. 9(12): p. e1003862
    [PMID:24339783]
  2. Jeong CW, et al.
    Control of Paternally Expressed Imprinted UPWARD CURLY LEAF1, a Gene Encoding an F-Box Protein That Regulates CURLY LEAF Polycomb Protein, in the Arabidopsis Endosperm.
    PLoS ONE, 2015. 10(2): p. e0117431
    [PMID:25689861]
  3. Burkart-Waco D,Ngo K,Lieberman M,Comai L
    Perturbation of parentally biased gene expression during interspecific hybridization.
    PLoS ONE, 2015. 10(2): p. e0117293
    [PMID:25719202]
  4. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]