PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013617893.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 390aa    MW: 43843 Da    PI: 4.9061
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013617893.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.56.1e-171865249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +i n+  r+ tf kR++g++KKA+ELS+LC ++v+  i s +++  e+
  XP_013617893.1 18 PITNSAARNQTFRKRKKGLFKKANELSTLCSVKVCAFINSCDNTETEF 65
                    799*********************************999999886666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.862969IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-18968IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-91131IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-2012103IPR002100Transcription factor, MADS-box
CDDcd002661.27E-231391No hitNo description
PfamPF003198.8E-171961IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-93146IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-94667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MIPKKVIRTA YGRIKIEPIT NSAARNQTFR KRKKGLFKKA NELSTLCSVK VCAFINSCDN  60
TETEFWPSRE GAEAGHSAFM GVLPEERCKK MYDQERHLEE KIQKGQEKAM RLQAENREIE  120
LREVIFDLLK GKTLMPHQYG DPSFMRELNL FIGGYANKVS LWTQFLEGNV EPVPPNVVAT  180
DAPGPVVGDV NPVVVGTKGS VINPTEAYDH IPQYDGMDMS VNEQVPGGSN DHVYLQNMNP  240
QEPFQYQTPT NFYDQTQPMF YGSSQGMNMN LEEPFQYQTP ANFDDQTQPM FYGSSQDMYT  300
GLSHDQGQSS NQYANANQQF MSLLMGRPQQ MSDVQDPASV ASMDDNNNRY QQLLVTSQIP  360
STTTTTTTTA GADFSGHSIN NGWPIRFGLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12933RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013617893.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013617893.10.0PREDICTED: MADS-box transcription factor PHERES 1-like
TrEMBLA0A0D3AXE70.0A0A0D3AXE7_BRAOL; Uncharacterized protein
STRINGBo2g155830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14795620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.12e-35M-type_MADS family protein