PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013617646.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 156aa MW: 17355 Da PI: 8.6822 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 44.5 | 3.5e-14 | 4 | 46 | 2 | 46 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 p lrWt++LH++Fv+a+e G e+AtPk++lel+ k Ltl+hv XP_013617646.1 4 PWLRWTTTLHACFVHAIELFGVLERATPKSVLELV--KYLTLAHV 46 569******************************96..56888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.48E-6 | 3 | 46 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 4 | 46 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-10 | 6 | 46 | IPR006447 | Myb domain, plants |
Pfam | PF14365 | 4.7E-24 | 62 | 140 | IPR025521 | Domain of unknown function DUF4409 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MTAPWLRWTT TLHACFVHAI ELFGVLERAT PKSVLELVKY LTLAHVLMSI CVTVAMSTPV 60 LTINSPDGDL IDCMKINDQL ALQHPLLKHH KIQETPTGHM VQKGENSGWQ VWHRSGACPR 120 GSIPVRRSED KNFQKNETVT PNAAADRATR GHQAST |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013617646.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013617646.1 | 1e-114 | PREDICTED: transcription repressor KAN1-like | ||||
TrEMBL | A0A0D3AU60 | 1e-113 | A0A0D3AU60_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g125650.1 | 1e-114 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM23493 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 4e-17 | G2-like family protein |