PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013617381.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 333aa    MW: 38447.6 Da    PI: 7.2735
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013617381.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.54.3e-52171461128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPt+eel+ +yLkkkv+ ++++l +vi+evd++k+ePw+L+ k ++ +  ++ewyfFs++dkky+tg+r+nra+++g+Wkatg+dk++
  XP_013617381.1  17 VPPGFRFHPTEEELLYYYLKKKVSYEPIDL-DVIREVDLNKLEPWELQdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRAIAAGFWKATGRDKSI 110
                     69****************************.9***************943444443456************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++++++gl+ktLvfy+grap+g+kt+W+mheyrl
  XP_013617381.1 111 HLNSSKKIGLRKTLVFYTGRAPHGHKTEWIMHEYRL 146
                     **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-598166IPR003441NAC domain
PROSITE profilePS5100557.13617166IPR003441NAC domain
PfamPF023651.4E-2618146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEIGSSSMVA GGAQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW  60
ELQDKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRAIAAGF WKATGRDKSI HLNSSKKIGL  120
RKTLVFYTGR APHGHKTEWI MHEYRLDDNE NEIQEDGWVV CRVFKKKNHF RGFQQEQDQD  180
HHHHQYININ SDHDHHHQHD TESNSNNHSS LISHSLDHHH HMGSQVHMPL HEFANTLSHG  240
SMHLPHLFSL DSAQPFVSSI NTTDIECSQN LLRLTSNNNY GGDWSFLDKL LTTTNMNQQV  300
HNHQAKCFRE TRNNGNNDHA VTSSSPVVSG KRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-511416814167NO APICAL MERISTEM PROTEIN
1ut4_B9e-511416814167NO APICAL MERISTEM PROTEIN
1ut7_A9e-511416814167NO APICAL MERISTEM PROTEIN
1ut7_B9e-511416814167NO APICAL MERISTEM PROTEIN
4dul_A9e-511416814167NAC domain-containing protein 19
4dul_B9e-511416814167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at early heart stage onward in all root basal daughter cells resulting from horizontal divisions in the COL progenitors and is later maintained in these cells. Present in root stem cell daughters and accumulates in maturing root cap layers. Detectable from very early stages of lateral root development. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
UniprotTISSUE SPECIFICITY: Accumulates in maturing root cap cells, in both COL and LRC cells. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013617381.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107931e-107AC010793.3 Genomic sequence for Arabidopsis thaliana BAC F20B17 from chromosome I, complete sequence.
GenBankCP0026841e-107CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013617381.10.0PREDICTED: protein SOMBRERO-like
SwissprotQ9MA171e-178SMB_ARATH; Protein SOMBRERO
TrEMBLA0A0D3ARR70.0A0A0D3ARR7_BRAOL; Uncharacterized protein
STRINGBo2g095440.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66532542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-158NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]