PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013617177.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 325aa    MW: 36606.2 Da    PI: 6.7519
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013617177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.91.7e-31188242256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     +r+rW++eLH++Fv+a+++LGGs++AtPk+i+++mkv+gLt+++vkSHLQkYR++
  XP_013617177.1 188 QRRRWSQELHRKFVDALHSLGGSQVATPKQIRDMMKVDGLTNDEVKSHLQKYRMH 242
                     8****************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-27184245IPR009057Homeodomain-like
PROSITE profilePS5129412.256184244IPR017930Myb domain
SuperFamilySSF466893.18E-17185245IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-24188242IPR006447Myb domain, plants
PfamPF002499.7E-8189240IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVQTDTDKMG LNLNLSMYSL AKPLSQFLDE VSRIKDYDSK LSEIDGYVGK LEEERKKIDV  60
FKRELPLCML LLNEAIETLK EEASSSVMMA SDGKLDVGEG AKVESDNKKN WMSSAQLWIS  120
NPNSQLQSTN EKEDRSVTHK PIQGGAFSSF NLPPAPLSLG TPASEILMDY NHQFSKPMQS  180
LHSQKKEQRR RWSQELHRKF VDALHSLGGS QVATPKQIRD MMKVDGLTND EVKSHLQKYR  240
MHIRKHPLHP AKTLSSSDQH VVLDKETQSL ISLTRSDSPQ SPLIDGGLFS NNGHSSEEAE  300
DEEKSDGRSW KSVSNKKKQG LDLEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-14189240455Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-14189240455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-14189240455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-14189240455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-14189240455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-14189240455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-14189240455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-14189240455Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, inflorescence apex, floral primordia, stamen primordia, carpel primordia and ovules. {ECO:0000269|PubMed:26903506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013617177.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9738390.0DQ973839.1 Brassica napus clone PBCESTNA15 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013617177.10.0PREDICTED: uncharacterized protein LOC106323631
SwissprotF4JRB01e-151HHO5_ARATH; Transcription factor HHO5
TrEMBLA0A0D3A1F20.0A0A0D3A1F2_BRAOL; Uncharacterized protein
STRINGBo1g005280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-152G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]