PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616985.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 461aa    MW: 52707.6 Da    PI: 6.7561
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.3e-083744121854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA + gLt +qV++WF N R +
  XP_013616985.1 374 MFQNflHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVR 412
                     5887779******************************88 PP

2BELL92.73.5e-30249319172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +rq+l++kk++Ll+ll++Vd+rY+++v++++tv+s+F+a+++l++ +++t++Al++iS+ +++L+++i+++i
  XP_013616985.1 249 QRQALEAKKTHLLDLLQMVDDRYSHCVDEIHTVVSAFHAATELDP-QLHTRFALQTISFLYKNLRERISKKI 319
                     689******************************************.***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.0E-46181317IPR006563POX domain
PfamPF075261.2E-27187316IPR006563POX domain
PROSITE profilePS5007111.062353416IPR001356Homeobox domain
SMARTSM003891.1E-4356420IPR001356Homeobox domain
CDDcd000864.98E-10356417No hitNo description
SuperFamilySSF466898.13E-15357424IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-25359422IPR009057Homeodomain-like
PfamPF059201.5E-14373412IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDNINTYSSL DNVMTNQNHL LMDLIPSRED STSFPTMLPW NSIRQDPLQM GVFDIFNSFL  60
TNKYLSSTSR STNVHETSFE AMAPPPSLHP MDHLRPYDDP SNNMWSLGEN SEFHAYPFIE  120
GVVGPSEPII STFGEEFPRN EFSLSLATDV SDECSEISLC AATKSTRITS EQASSSSKDM  180
SNVSQVIFCS KYLHSVQEIL SHFATYSLKG LETNPQCYFS SRGTESEGTN SAFTSCYENL  240
NEFLDGGSQR QALEAKKTHL LDLLQMVDDR YSHCVDEIHT VVSAFHAATE LDPQLHTRFA  300
LQTISFLYKN LRERISKKIL MMGSVLERGK EKSQEDSIFP QHCLLQQLKR KNHQVWRPQR  360
GLPEKSVSVL RTWMFQNFLH PYPKDSEKHL LAIRSGLTRS QVSNWFINAR VRLWKPMIED  420
MYAEMNKRKM INTHLQGGNG GSVIRVPKSV MMSQERCKIR E
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}.
UniprotTISSUE SPECIFICITY: Most abundant in flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616985.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721740.0AY072174.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankAY0965130.0AY096513.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankX801260.0X80126.1 A.thaliana AtH1 mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616985.10.0PREDICTED: homeobox protein ATH1-like
RefseqXP_013616989.10.0PREDICTED: homeobox protein ATH1-like
SwissprotP487310.0ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A0D3A2D00.0A0A0D3A2D0_BRAOL; Uncharacterized protein
STRINGBo1g008560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.10.0homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]