PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616850.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 287aa    MW: 32197 Da    PI: 5.7042
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-193383256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                     y+GVr++  +g+WvAeIr+p     +  +r +lg+f t  eAa a+++a+kkl+g+
  XP_013616850.1 33 TYRGVRQRT-WGKWVAEIREP-----NhgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 83
                    69****999.**********9.....336*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-283288No hitNo description
PfamPF008476.3E-143383IPR001471AP2/ERF domain
SMARTSM003808.4E-343396IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-203389IPR016177DNA-binding domain
PROSITE profilePS5103220.5473390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-293389IPR001471AP2/ERF domain
PRINTSPR003677.1E-103445IPR001471AP2/ERF domain
PRINTSPR003677.1E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEEEQPPAKK RNMGRSRKGC MKGKGGPENA TCTYRGVRQR TWGKWVAEIR EPNHGTRLWL  60
GTFNTSVEAA MAYDEAAKKL YGHEAKLNLL HPQQQQKEKV NRNLSFSDHG SGSWDYKLAV  120
RGLDLGLVPS SGSRGSWLGS FSFMQEDDKT TSESSVSWLL PKRSDSQYQE SVNAASSLTF  180
STKLKPMTPD YGLSNGVGSR FLVEQEMKTV YDVSSSCVWS DNKESILVPS VGGGEGMHRT  240
EVEEGTGYLE MDDLLEIDDL GLLIGKNGDF KNWCCDEFQH PWNWFLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-163489359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-1534911573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0516261e-109AC051626.5 Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V, complete sequence.
GenBankAY5608531e-109AY560853.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18450) mRNA, complete cds.
GenBankBT0260741e-109BT026074.1 Arabidopsis thaliana At5g18450 mRNA, complete cds.
GenBankCP0026881e-109CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616850.10.0PREDICTED: dehydration-responsive element-binding protein 2G-like
RefseqXP_013727717.20.0dehydration-responsive element-binding protein 2G
SwissprotP618271e-151DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A0D3AJR80.0A0A0D3AJR8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D1G00.0A0A3P6D1G0_BRAOL; Uncharacterized protein
STRINGBo2g016490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-137ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]