PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013616822.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 223aa MW: 24790.9 Da PI: 7.7925 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.7 | 2.6e-15 | 28 | 88 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ XP_013616822.1 28 RSRWSPKPEQILILESIFNSgIVNPPKDETVRIRKMLeqfgAVGDTNVFYWFQNRRSRSRR 88 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 107 | 1.2e-34 | 27 | 90 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q XP_013616822.1 27 SRSRWSPKPEQILILESIFNSGIVNPPKDETVRIRKMLEQFGAVGDTNVFYWFQNRRSRSRRRQ 90 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-9 | 6 | 89 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.65E-14 | 21 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.353 | 24 | 89 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-6 | 26 | 93 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.9E-13 | 28 | 88 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MDQEGSSQSP TGQGRSPSAP SNSTAPSRSR WSPKPEQILI LESIFNSGIV NPPKDETVRI 60 RKMLEQFGAV GDTNVFYWFQ NRRSRSRRRQ RQLQTATAAA VTSRGAEDQQ HMTTMSMHHP 120 YRNNEINLGF GSCSNSSANF FFNDPSSQVS SFLLGHSSSS SNGGCESNNG MENLFAMYGH 180 ESDHPHLHQH SSNDATISNP SDQNSSFHYQ QGLKVNKEDT TFK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013616822.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189450 | 0.0 | AC189450.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB071M18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616822.1 | 1e-166 | PREDICTED: WUSCHEL-related homeobox 12-like | ||||
Swissprot | Q8GY25 | 7e-80 | WOX12_ARATH; WUSCHEL-related homeobox 12 | ||||
TrEMBL | A0A0D3AJL5 | 1e-155 | A0A0D3AJL5_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g013980.1 | 1e-156 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2819 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 6e-54 | WUSCHEL related homeobox 12 |
Publications ? help Back to Top | |||
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