PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013616756.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 207aa MW: 22709.6 Da PI: 9.4768 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.5 | 2.3e-08 | 38 | 61 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 kt++C++f+ t C+ G++C+F H XP_013616756.1 38 KTKPCKDFFSTNGCPLGENCRFLH 61 9*********************** PP | |||||||
2 | zf-CCCH | 38.6 | 1.8e-12 | 173 | 197 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk elC fa+ G+C+yGdrC+FaHg XP_013616756.1 173 YKSELCEKFAA-GECNYGDRCHFAHG 197 9**********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0046 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.08 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-9 | 36 | 61 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-7 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 38 | 61 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.1370.10 | 2.7E-9 | 100 | 159 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 2.6E-5 | 101 | 150 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 8.77E-10 | 101 | 159 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.91E-5 | 103 | 149 | No hit | No description |
PROSITE profile | PS50084 | 10.337 | 104 | 153 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-15 | 170 | 202 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-8 | 172 | 198 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-8 | 172 | 203 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.469 | 172 | 199 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 173 | 197 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDTHKRGHSD TVSSSNSNVG SKRPKQKMES ISTGLRSKTK PCKDFFSTNG CPLGENCRFL 60 HYVPGGYKAV AKMLNLEPQI AESSKKTQTS SSASVAAKII VTAIIGKDGN RTKQLCRETG 120 VKLPIVDHER GPNLKNVEID GNYDQINEAN GRMRDLIRRF GSDPANSAPR SSYKSELCEK 180 FAAGECNYGD RCHFAHGVAE LRWSGID |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013616756.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616756.1 | 1e-155 | PREDICTED: zinc finger CCCH domain-containing protein 52-like | ||||
Swissprot | Q9FG30 | 3e-74 | C3H52_ARATH; Zinc finger CCCH domain-containing protein 52 | ||||
TrEMBL | A0A0D3AI04 | 1e-154 | A0A0D3AI04_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g007380.1 | 1e-154 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21561 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 3e-69 | C3H family protein |
Publications ? help Back to Top | |||
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