PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616662.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 375aa    MW: 41717.1 Da    PI: 7.9051
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.73.9e-16138181155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++++WtpeLH++Fv+aveqL G++kA+P          +Lt+++v+ HLQkYR+
  XP_013616662.1 138 KAKVDWTPELHRNFVQAVEQL-GIDKAVP----------SLTRHNVANHLQKYRS 181
                     6799*****************.*****99..........59*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.823135184IPR017930Myb domain
SuperFamilySSF466899.56E-13136185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-15136185IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-14138181IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MLSPLIVNTT SRENYMAADF SDFTAEGLPD FTMVGEGSLY LLEGIDYYDD FFIGFDGDDA  60
LPDLKIDCDI LGEYSGSWRD DEQEMEGNTS TKSETSERDG GMVKLDGGAR TPKTVRRGKR  120
KVKKNKDCLS LDNEIKKKAK VDWTPELHRN FVQAVEQLGI DKAVPSLTRH NVANHLQKYR  180
SYRKHLLARE AEAANWNLRR HATVAVAGLG GKKPWKAPAL GYPPNVTPMH HGHFRPLHVL  240
GHPTWPKHKH NHPSSSTHRT YPIPAVAAPP SSWPGQPPYW HQQALYPQGY GMATPNHSMY  300
NNKSETSIGV PTRQLSPTTN PPIDIHPSNE SIDAAIGDVI TKPWLPLPLG LKPPSVDGVM  360
TELQRQGVTN VPHLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRGKRKVKK
2118126KRKVKKNKD
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons and rosette and cauline leaves. Expressed at low levels in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:12220263}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616662.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616662.10.0PREDICTED: transcription activator GLK2-like isoform X2
RefseqXP_013685710.20.0transcription activator GLK2-like
SwissprotQ9FFH01e-171GLK2_ARATH; Transcription activator GLK2
TrEMBLA0A0D3AU150.0A0A0D3AU15_BRAOL; Uncharacterized protein
STRINGBo2g122230.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44190.11e-155GOLDEN2-like 2
Publications ? help Back to Top
  1. Leister D,Kleine T
    Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants.
    Physiol Plant, 2016. 157(3): p. 297-309
    [PMID:26876646]
  2. Nagatoshi Y, et al.
    GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(15): p. 4218-23
    [PMID:27035938]
  3. Han XY, et al.
    GOLDEN2-LIKE transcription factors coordinate the tolerance to Cucumber mosaic virus in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2016. 477(4): p. 626-632
    [PMID:27346129]
  4. Ni F, et al.
    Turnip Yellow Mosaic Virus P69 Interacts with and Suppresses GLK Transcription Factors to Cause Pale-Green Symptoms in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 764-766
    [PMID:27964999]
  5. Bastakis E,Hedtke B,Klermund C,Grimm B,Schwechheimer C
    LLM-Domain B-GATA Transcription Factors Play Multifaceted Roles in Controlling Greening in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 582-599
    [PMID:29453227]
  6. Zubo YO, et al.
    Coordination of Chloroplast Development through the Action of the GNC and GLK Transcription Factor Families.
    Plant Physiol., 2018. 178(1): p. 130-147
    [PMID:30002259]