PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013616625.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 304aa MW: 33781.8 Da PI: 4.4468 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.1 | 1.1e-13 | 102 | 150 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 + GVr++k +g+W+AeIr+p +r +lg+f t e+A++a+ + r+++ XP_013616625.1 102 KPVGVRQRK-WGKWAAEIRHP-----IlkTRRWLGTFLTLEDAHQAYKKKRREYD 150 678*****9.**********8.....556999*******************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.593 | 102 | 159 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-7 | 102 | 150 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.8E-9 | 102 | 151 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-5 | 103 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.92E-17 | 104 | 142 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-12 | 104 | 149 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-16 | 105 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-5 | 125 | 141 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MVAIRKQRVT KKPKRDNSLS SDPQETQVLR KVRIIVADPY ATDDSSSDEE EMIPRPRPVK 60 RIVREINFPV HSESPSPDST MTMSKRAGAA RLAASRAKLL NKPVGVRQRK WGKWAAEIRH 120 PILKTRRWLG TFLTLEDAHQ AYKKKRREYD ELLGIVDDPL PVSEGAKPEV SSSENSQCSG 180 SSTTTSLEQD EMMKITTNDD DGVDLSEEVM FDFNFADLQI PEFLGDGGSM GGGNELGLDF 240 DCFFTDDQLD DFGLLDDISG FEESGLSALP DFDFADVELD LAGSSFLDQT SPLNMTCPMK 300 SFAA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 146 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013616625.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616624.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118-like | ||||
Refseq | XP_013616625.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118-like | ||||
Swissprot | Q9CA27 | 6e-98 | EF118_ARATH; Ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | A0A0D3AP02 | 0.0 | A0A0D3AP02_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g060040.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 4e-64 | ERF family protein |
Publications ? help Back to Top | |||
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