PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013616588.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24860 Da PI: 8.45 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.4e-20 | 80 | 130 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r +lg+++ta eAa+a++ a+ +l+g XP_013616588.1 80 HYRGVRRRP-WGKYAAEIRDP---NkKGSRLWLGTYDTAVEAARAYDLAAFELRG 130 7********.**********9...4345*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.7E-32 | 79 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-37 | 80 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.238 | 80 | 138 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.81E-30 | 80 | 138 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-23 | 80 | 140 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-14 | 80 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MATKQEALAI EYISQHLLTD FASQDHHLHS ETTPRTIGNH NPKPNSTLNR RKPPLPNLSV 60 PVSSTMKKPE EEEEEEEKRH YRGVRRRPWG KYAAEIRDPN KKGSRLWLGT YDTAVEAARA 120 YDLAAFELRG RKAILNFPLD VRATSESCFV GLGKRKRLKS FVAEEETVPV RAKAEEKESD 180 TTVAEVEAVP LTPSSWKGVW DLGAGDGIFS VPPLTPTSPS SAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-26 | 79 | 141 | 4 | 66 | ATERF1 |
3gcc_A | 1e-26 | 79 | 141 | 4 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013616588.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ171205 | 0.0 | HQ171205.1 Brassica napus ethylene response factor 56 (ERF56) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616588.1 | 1e-164 | PREDICTED: ethylene-responsive transcription factor ERF104-like | ||||
Swissprot | Q9FKG1 | 5e-99 | EF104_ARATH; Ethylene-responsive transcription factor ERF104 | ||||
TrEMBL | A0A0D3AY65 | 1e-162 | A0A0D3AY65_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g161480.1 | 1e-163 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13464 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61600.1 | 3e-86 | ethylene response factor 104 |
Publications ? help Back to Top | |||
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