PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616587.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 309aa    MW: 34266.7 Da    PI: 9.6963
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616587.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81.1e-12101146247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+  ++ + k+ G+g+W+ I++ + ++Rt+ q+ s+ qky
   XP_013616587.1 101 NPWTEEEHRMFLVGLKRIGKGDWRGISKSFVTTRTPTQVASHAQKY 146
                      69*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.21295151IPR017930Myb domain
SuperFamilySSF466894.56E-1797151IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-1698149IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.4E-1099145IPR009057Homeodomain-like
SMARTSM007171.2E-999149IPR001005SANT/Myb domain
PfamPF002491.1E-10101146IPR001005SANT/Myb domain
CDDcd001672.79E-8102147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MATTAKTCSH CGNNGHNAPT CCLNSVNKGS VKLFGVDISS DPIKSPEVTT LRKSLSLGNL  60
DSLLDNGNGD LIAAVEDTGY HSDGQIHSKK RRSSHEKKKG NPWTEEEHRM FLVGLKRIGK  120
GDWRGISKSF VTTRTPTQVA SHAQKYFLRL NGNDKRKRRA SLFDISIEDQ KEKEKNFPDA  180
SSSKTSSKQL ITGSQEPVQV QTQTEISNRF QNLSMGYIPI YQNVPPYYNF SPFMFHPMYY  240
ANPESIRYVH PSGIPVPRHV PISMPQPHLN EVSDMTKKDG LELAIGLPPP PPQATGSTDL  300
TAHGTIHVK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616587.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616587.10.0PREDICTED: uncharacterized protein LOC106322986
SwissprotQ9FKF91e-165M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A0D3AY640.0A0A0D3AY64_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DV640.0A0A3P6DV64_BRAOL; Uncharacterized protein
STRINGBo2g161470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-145MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]