PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616458.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 446aa    MW: 48764.3 Da    PI: 9.7894
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616458.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011199220323
                     ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                     C+ Cg++F+  ++L+ H+ + H
  XP_013616458.1 199 CSQCGEVFPKLESLELHQAVrH 220
                     ******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037197225IPR007087Zinc finger, C2H2
PROSITE patternPS000280199220IPR007087Zinc finger, C2H2
SuperFamilySSF563993.36E-19222442No hitNo description
Gene3DG3DSA:3.90.228.104.5E-12224443IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MALLTFLPEN AESPKHTPPP NKRKKREINH TNQTQKPHKP QKQKAVAPQK QPSSWDQIKN  60
LLTCKQIEGS RIHDPSKNSQ PGPSTTTHLL SPSKLGSSCS SICRFRDVAH GNTRVVHRAD  120
QSPDVANSAT PDSETRLLTR KPGQHGSSSS SRSLRYGSTT LSATTSFRAM QFRKLSGCYE  180
CHMIVDPSKY PISPRVRACS QCGEVFPKLE SLELHQAVRH AVSELGPEDS GRNIVEIIFK  240
SSWLKKDSPI CKIERILKVH NTQRTIQRFE DCRDAVKARA LQTTRKDARC AADGNELLRF  300
YCTTLTCSLG SRGSSSLCSN LPNCGVCNVI RHGFQGKSGA GEANAAVRTT ASSGRADDLL  360
RCSDDARRVM LVCRVIAGSV KRVDSTAAEK KSPVEDNSTV GVSSTGGVFD SVAVNAGAYS  420
NMEELVVYNP RAILPCFVVI YKVVES
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616458.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529750.0AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616458.10.0PREDICTED: uncharacterized protein LOC106322857
TrEMBLA0A0D3AQU80.0A0A0D3AQU8_BRAOL; Uncharacterized protein
STRINGBo2g085310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.10.0C2H2-like zinc finger protein