PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013616256.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 934aa MW: 105016 Da PI: 9.1821

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013616256.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.6e-07	44	77	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 W + E e+++da +++G + Wk++a+ + ++R+ XP_013616256.1 44 QWAKVELERFYDAYRKHGRD-WKKVAAAVRNNRSV 77 69999***********77.*****9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.93E-6	43	90	IPR009057	Homeodomain-like
SMART	SM01135	4.2E-47	549	649	IPR033471	DIRP domain
Pfam	PF06584	2.2E-29	549	648	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 934 aa Download sequence Send to blast
MGPSRTSKSV YKRSNKEPSP EKELRNSSKT KPRKKRLTDK LGPQWAKVEL ERFYDAYRKH 60 GRDWKKVAAA VRNNRSVDMV EALFNMNRAY LSLPEGTASV VGLIAMMTDH YSVIEESESE 120 EEEEGHGASG VSVKYQKRKL AKLSSIDFRQ EVIPPHSVAS AEGCLPFLKL TQAYGIERRA 180 AGKRTPRFPV PSEYEREERE GCMPPSKRAK KQLEAHDDDT LALAMANAVR RGEGSPYRRA 240 EVNGSTSNGK MSQAKEAQSK HGASSMVRNV VRISRDRRHI KAAPGGALLV NTEGAGTVEK 300 GKNVRFEEAE GAASNDSGEA GSANEGFKSG DEFEALQALA ALSGLLSPDE LKESESNPQL 360 KEDRIGNNVD EKPNTPETFV RSYHRRKSKQ AAPEDSLILP VSPADANAVS IGEPGTSKRK 420 RKTLHDKESA EDDNLKTMFK ARRADQSPPK RLKTAKTAEE SSSPSDKKIT EPDAVVSATQ 480 VSGPGPASLR QRPPNRRKMS LKKSLRERAK ISETTHEKPH SCKKELLKEQ VSTCLSCPLV 540 RRRCIYEWFY SAIDYPWFAK MEFIDFLNHL GIGTPRLTRL EWSVIKSSLG RTRRFSEKFI 600 QEERDKLKQY RESARKHYTE LRTGAREELP RDFAQPLSVG NRVIAIHPKT REVRDGKILA 660 VDHNKCNVLF DDLGVDSVMD IDIMPLNPLE YMPYGLMRQI ESKEVELNRH PSSDKSALFP 720 PHVLENIDFS MLPPEKQNDR DKRVKTDQSY NIANDNARQG ENQRALMLEY ASDAEEMEPE 780 MLGIVSGSRS IAQAMVDAAM KAASLVKDDK DKRNVVLQAL DSMDEHHQAL NYSVVSGIKH 840 QDQTNGSFEH HHQSWSPSNT EGLMASELIA SCLSTWLMIQ RCTEKQYPPA DVAQVMEIAV 900 RSLEPRCPQN MPIYRDIQTC MGWITNQIMF LVKT

Sequence ? help Back to Top

Protein Sequence Length: 934 aa Download sequence Send to blast

MGPSRTSKSV YKRSNKEPSP EKELRNSSKT KPRKKRLTDK LGPQWAKVEL ERFYDAYRKH  60
GRDWKKVAAA VRNNRSVDMV EALFNMNRAY LSLPEGTASV VGLIAMMTDH YSVIEESESE  120
EEEEGHGASG VSVKYQKRKL AKLSSIDFRQ EVIPPHSVAS AEGCLPFLKL TQAYGIERRA  180
AGKRTPRFPV PSEYEREERE GCMPPSKRAK KQLEAHDDDT LALAMANAVR RGEGSPYRRA  240
EVNGSTSNGK MSQAKEAQSK HGASSMVRNV VRISRDRRHI KAAPGGALLV NTEGAGTVEK  300
GKNVRFEEAE GAASNDSGEA GSANEGFKSG DEFEALQALA ALSGLLSPDE LKESESNPQL  360
KEDRIGNNVD EKPNTPETFV RSYHRRKSKQ AAPEDSLILP VSPADANAVS IGEPGTSKRK  420
RKTLHDKESA EDDNLKTMFK ARRADQSPPK RLKTAKTAEE SSSPSDKKIT EPDAVVSATQ  480
VSGPGPASLR QRPPNRRKMS LKKSLRERAK ISETTHEKPH SCKKELLKEQ VSTCLSCPLV  540
RRRCIYEWFY SAIDYPWFAK MEFIDFLNHL GIGTPRLTRL EWSVIKSSLG RTRRFSEKFI  600
QEERDKLKQY RESARKHYTE LRTGAREELP RDFAQPLSVG NRVIAIHPKT REVRDGKILA  660
VDHNKCNVLF DDLGVDSVMD IDIMPLNPLE YMPYGLMRQI ESKEVELNRH PSSDKSALFP  720
PHVLENIDFS MLPPEKQNDR DKRVKTDQSY NIANDNARQG ENQRALMLEY ASDAEEMEPE  780
MLGIVSGSRS IAQAMVDAAM KAASLVKDDK DKRNVVLQAL DSMDEHHQAL NYSVVSGIKH  840
QDQTNGSFEH HHQSWSPSNT EGLMASELIA SCLSTWLMIQ RCTEKQYPPA DVAQVMEIAV  900
RSLEPRCPQN MPIYRDIQTC MGWITNQIMF LVKT

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013616256.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013616256.1	0.0	PREDICTED: protein ALWAYS EARLY 1-like
Swissprot	Q6A331	0.0	ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBL	A0A0D3AX99	0.0	A0A0D3AX99_BRAOL; Uncharacterized protein
STRING	Bo2g155350.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	8e-65	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]