PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013616196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 358aa MW: 38633.8 Da PI: 7.5495 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.8 | 5.6e-36 | 43 | 125 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgk 89 +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++a+++i+el++++ s+ ++ +a+++ +++ XP_013616196.1 43 TGKKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIRKAQTSIDELAQLPPWSPADA-----IRKAAANAKPR 125 79**************************************************************43333222.....12222122221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-31 | 43 | 112 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.196 | 45 | 103 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MADDHDEAHH FLHPQPPPPS SMRHGAASDE IVEVQGGHIV RSTGKKDRHS KVCTAKGPRD 60 RRVRLSAHTA IQFYDVQDRL GFDRPSKAVD WLIRKAQTSI DELAQLPPWS PADAIRKAAA 120 NAKPRRTAAK TKISPSPPPP QREQLQFGGA RSGGFNGVAE LPSFLPPSMD SESFFPVVGS 180 STKAPPSQDL RLSLHSFPDG PPSLHHSAPE PVLFYGQSNP FGYDTSTGGW EQQSIQRLVA 240 CNGGGATDTG NGGGGFLFAP PPNASATSFQ PVLGQSQLCS QRGPLQSSYT PMIRAWFDPH 300 HHQSISTEDL SHHIPPPVFA SGEFSSGFRV PARFQGQEEE QHDGLTSKPS SASSISRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-19 | 50 | 103 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-19 | 50 | 103 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013616196.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189530 | 1e-115 | AC189530.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH001C24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616186.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Refseq | XP_013616196.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 1e-151 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A0D3ADJ0 | 0.0 | A0A0D3ADJ0_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g129830.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-135 | TCP family protein |