PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013616190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 368aa MW: 41078.8 Da PI: 4.9751 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.9 | 8.1e-32 | 185 | 239 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++ + Lt++hvkSHLQkYR+ XP_013616190.1 185 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPILTIYHVKSHLQKYRT 239 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.23E-16 | 183 | 239 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.6E-29 | 183 | 241 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-22 | 185 | 239 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.0E-9 | 187 | 238 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.4E-21 | 273 | 319 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MNNPVPCQAV SGGKSGGYMF PSPSGFCNVS PLSTHGMIPQ TQPPVSTTPS DRLAMQDCFL 60 EAQSMNHPLP EFSDPLDEFF DFADHVPALN PQAESSDLRV GSTVEVHEKS EWQSWADQLM 120 SVDNGSEPNW SELLGDPSPH NPTPTPTPSL DVPRQEMVAN HQQQHQVVSL EEQMNSSASG 180 AATTKQRMRW TPELHEAFVE AVNQLGGSER ATPKAVLKLL NNPILTIYHV KSHLQKYRTA 240 RYKPETSEAT GEPQEKKMTS IEDIKSLDMK TSFEITQALR LQMEVQKRLH EQLETQRALQ 300 LQIEKQGRYL QMMFEKQQKL EENKSSSSSK QCNGASAEVE FESGVVTQIA DQSESAVSVS 360 RKRAREDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-27 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-27 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-27 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-27 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-27 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-27 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-27 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-27 | 185 | 243 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013616190.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616188.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X2 | ||||
Refseq | XP_013616189.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X3 | ||||
Refseq | XP_013616190.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X4 | ||||
Swissprot | Q8GUN5 | 0.0 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A0D3AX44 | 0.0 | A0A0D3AX44_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g151830.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.3 | 1e-174 | G2-like family protein |
Publications ? help Back to Top | |||
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