PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013616188.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 401aa MW: 44781.9 Da PI: 4.9985 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.8 | 9.2e-32 | 218 | 272 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++ + Lt++hvkSHLQkYR+ XP_013616188.1 218 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPILTIYHVKSHLQKYRT 272 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.76E-16 | 216 | 272 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-29 | 216 | 274 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-22 | 218 | 272 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.4E-9 | 220 | 271 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.7E-21 | 306 | 352 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MFRSVPPLMS STLHTSVEDR YPNSFYGSSG QELMNNPVPC QAVSGGKSGG YMFPSPSGFC 60 NVSPLSTHGM IPQTQPPVST TPSDRLAMQD CFLEAQSMNH PLPEFSDPLD EFFDFADHVP 120 ALNPQAESSD LRVGSTVEVH EKSEWQSWAD QLMSVDNGSE PNWSELLGDP SPHNPTPTPT 180 PSLDVPRQEM VANHQQQHQV VSLEEQMNSS ASGAATTKQR MRWTPELHEA FVEAVNQLGG 240 SERATPKAVL KLLNNPILTI YHVKSHLQKY RTARYKPETS EATGEPQEKK MTSIEDIKSL 300 DMKTSFEITQ ALRLQMEVQK RLHEQLETQR ALQLQIEKQG RYLQMMFEKQ QKLEENKSSS 360 SSKQCNGASA EVEFESGVVT QIADQSESAV SVSRKRARED E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-27 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-27 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-27 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-27 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-27 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-27 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-27 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-27 | 218 | 276 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013616188.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616188.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X2 | ||||
Swissprot | Q8GUN5 | 0.0 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A0D3AX44 | 0.0 | A0A0D3AX44_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g151830.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
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