PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616187.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 437aa    MW: 48821.5 Da    PI: 5.1956
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61e-31254308155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l++ + Lt++hvkSHLQkYR+
  XP_013616187.1 254 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPILTIYHVKSHLQKYRT 308
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-29252310IPR009057Homeodomain-like
SuperFamilySSF466894.12E-16252308IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-22254308IPR006447Myb domain, plants
PfamPF002493.9E-9256307IPR001005SANT/Myb domain
PfamPF143793.1E-21342388IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MHQRFPSLQI HFSPSEFRIL CGVVVTKQNC SCSMTMANDF GYSTSFSALH TSVEDRYPNS  60
FYGSSGQELM NNPVPCQAVS GGKSGGYMFP SPSGFCNVSP LSTHGMIPQT QPPVSTTPSD  120
RLAMQDCFLE AQSMNHPLPE FSDPLDEFFD FADHVPALNP QAESSDLRVG STVEVHEKSE  180
WQSWADQLMS VDNGSEPNWS ELLGDPSPHN PTPTPTPSLD VPRQEMVANH QQQHQVVSLE  240
EQMNSSASGA ATTKQRMRWT PELHEAFVEA VNQLGGSERA TPKAVLKLLN NPILTIYHVK  300
SHLQKYRTAR YKPETSEATG EPQEKKMTSI EDIKSLDMKT SFEITQALRL QMEVQKRLHE  360
QLETQRALQL QIEKQGRYLQ MMFEKQQKLE ENKSSSSSKQ CNGASAEVEF ESGVVTQIAD  420
QSESAVSVSR KRAREDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-27254312260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-27254312260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-27254312260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-27254312260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-27254312260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-27254312260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-27254312260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-27254312260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616187.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616187.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A0D3AX440.0A0A0D3AX44_BRAOL; Uncharacterized protein
STRINGBo2g151830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.20.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]