PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616172.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 485aa    MW: 53242.6 Da    PI: 8.4407
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.11.8e-33229285259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgs+fprsYY+Ct+  Cpvkkkvers  d++v+ei+Y+g+Hnhe
  XP_013616172.1 229 DDGYNWRKYGQKQVKGSDFPRSYYKCTHGACPVKKKVERSV-DGQVTEIIYKGQHNHE 285
                     8****************************************.***************8 PP
2WRKY104.84.7e-33388446159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+d k+v++tYeg+Hnh+
  XP_013616172.1 388 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCRVRKHVERAANDRKAVITTYEGKHNHD 446
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-29220287IPR003657WRKY domain
PROSITE profilePS5081123.973223287IPR003657WRKY domain
SuperFamilySSF1182901.22E-25226287IPR003657WRKY domain
SMARTSM007747.6E-36228286IPR003657WRKY domain
PfamPF031061.6E-25229285IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-36373448IPR003657WRKY domain
SuperFamilySSF1182902.88E-29380448IPR003657WRKY domain
PROSITE profilePS5081137.608383448IPR003657WRKY domain
SMARTSM007741.3E-37388447IPR003657WRKY domain
PfamPF031061.8E-25389446IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MAEKEEEEQQ QTKQSVTSKS STGGASRPTI SLPRRPFGEM FYSGGVGFSG FSPGPMTLVS  60
NMFSDPDEFK SFSQLVAGAV ASPAAAAVVA SAHQTPVSSV GGGGDSLLDP RIKQNRPTGL  120
MITQPPGMFT VPAGLSPATL LDSPSFFGLF SPIQGSFGTT HQQALAQVTA QAVHGNNVQI  180
QSESSTQQQQ TSLTEVPSFS APVQDQRDNS EVTVYEHRSQ PQNADKPADD GYNWRKYGQK  240
QVKGSDFPRS YYKCTHGACP VKKKVERSVD GQVTEIIYKG QHNHEPPQNN KRGRDNDNNN  300
NNGSCNSLNK SKRDQETSQV TTTEQISEAS DSEEVGNAET SLGGTHEDEP DPKRRNTEVR  360
VSEPVSSSNR TVTEPRIIVQ TKSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTPGCR  420
VRKHVERAAN DRKAVITTYE GKHNHDIPAS RTSSHQLRPN NNLSTVNLNQ QQTVARLRLK  480
EEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-41229449878Probable WRKY transcription factor 4
2lex_A2e-41229449878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616172.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931350.0KM593135.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616172.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0D3AVP10.0A0A0D3AVP1_BRAOL; Uncharacterized protein
STRINGBo2g136900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]