PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616041.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 395aa    MW: 45394.6 Da    PI: 5.8108
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.42.6e-2577156286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e++ Li++rrem+  ++++k++k+lWee+s+kmre+gf rsp +C++kw+nl k++kk ++ ++      s ++++++++e
  XP_013616041.1  77 WVQDETRILIALRREMDGLFNTSKSNKHLWEEISSKMREKGFDRSPAMCTDKWRNLLKEFKKAAKDQQV-----SGKMSHYKEIE 156
                     **************************************************************9988775.....34566777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-567138IPR009057Homeodomain-like
PROSITE profilePS500908.74669133IPR017877Myb-like domain
SuperFamilySSF466894.61E-573145IPR009057Homeodomain-like
SMARTSM007173.0E-673135IPR001005SANT/Myb domain
CDDcd122031.23E-2875139No hitNo description
PfamPF138371.1E-1876157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MFVSSEKPRS PIDFYKDDDD NNNPSSPTSR DINMMIDGDL QPPPHHQHQH QILLGDNSSS  60
EDHEINNKAP KKRAETWVQD ETRILIALRR EMDGLFNTSK SNKHLWEEIS SKMREKGFDR  120
SPAMCTDKWR NLLKEFKKAA KDQQVSGKMS HYKEIEDLLR ERSKKVATSY KSVTAPSKVD  180
SFMQFTDKGF EDTGISFASV EANGRPTLNL ERQLDHDGHP LAIASADVDT ANGVPPWNWR  240
EPAGNGSDGQ PFVGKIITVK YGDYTRRVGI DGTAEAIKEA IRSAFRFRTR RAFWLEDEEQ  300
VVRSLDRDMP LGNYTLHVDE GIAVRVCHYD ESDPLPVHQE EKVFYTEEDY REFLGRRGWT  360
CLREFDGGFR NIESMVRNVD SMDDLQPGVL YRGMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-4071154186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00380DAPTransfer from AT3G25990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616041.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616041.10.0PREDICTED: trihelix transcription factor GT-4 isoform X1
SwissprotQ9LU920.0TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLA0A0D3AVY60.0A0A0D3AVY6_BRAOL; Uncharacterized protein
STRINGBo2g138840.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.10.0Trihelix family protein