PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013615905.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 588aa    MW: 63643 Da    PI: 5.8802
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013615905.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.21.1e-1052145882374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++++e+A+a+s+g++e + +lLa +s + +++ ++ ++l+ +++ AL+ r++       +  pps+++e   +e+l +++l++e+sP++k++++
  XP_013615905.1 214 RQTVMEIATAISEGKTEIVAELLACVSPTPNQKTNSEEKLVNFMVTALRLRINP----AESRAPPSPARELCGKEHLISTQLLYELSPCFKLGFM 304
                     6889*************************************************9....66777899998888*********************** PP

            GRAS  97 taNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                     +aN aIl+a+ ++      +H++Df+i++G+Q+++Ll+aL++R+   ++   ++iT+v +  +g +e+l+++g+rL+++ ++lgv+++fnv+++ 
  XP_013615905.1 305 AANLAILDAAGNNhdggVLMHVVDFEIGEGGQYVNLLHALSTRRsgdNKHLVVKITAVTN--HGVEERLKAVGDRLSQLGDRLGVSLRFNVVASL 397
                     **********9997754567*********************999543334489*******..77***************************8888 PP

            GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                     rl d++ e+L + p+E laVnl+++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n+++Fl r++ea+ +y al+d +e+++p+ +
  XP_013615905.1 398 RLGDISRESLGCGPDEPLAVNLAFKLYRVPDESVCVENPRDELLRRVKGLEPRVVTLVEQEMNSNTAPFLGRVSEACACYGALLDLVESSVPSSN 492
                     *********************************************************************************************** PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSa 372
                      +r+kvE+  +gr++ n+vaceg +r+er+e ++kWr+r+ +aGF+ +plsek+a+++k+ l + +    g++v+e++g +++ W++r+L ++Sa
  XP_013615905.1 493 LDRAKVEEG-IGRKLINAVACEGIDRIERCEVFGKWRMRMIMAGFELMPLSEKIAESMKSRLGNGNrvHSGFTVKEDNGGVCFRWMGRTLAVASA 586
                     *********.*************************************************999887767899************************ PP

            GRAS 373 Wr 374
                     Wr
  XP_013615905.1 587 WR 588
                     *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.29187566IPR005202Transcription factor GRAS
PfamPF035143.7E-103214588IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MVSGFPNDGG GPEFYGGDGR SIPGGFGTVV NTVNNNPQAT YRSQIPGIFL DQTGNRFSGG  60
NGIGGKRTLA DFQAAQQQQA AINAFLLRSV KPRTFQNLQS PTIGLTSVND MSLFGGSSQT  120
QHQSDLVGIR MGYGSSIEPV QNLNRVEESK NMLSSLRELE KQLLEDDDES DARGGDDDVS  180
TITHSNSDWL HSLVTPVLSS SPSSASSSST VCSRQTVMEI ATAISEGKTE IVAELLACVS  240
PTPNQKTNSE EKLVNFMVTA LRLRINPAES RAPPSPAREL CGKEHLISTQ LLYELSPCFK  300
LGFMAANLAI LDAAGNNHDG GVLMHVVDFE IGEGGQYVNL LHALSTRRSG DNKHLVVKIT  360
AVTNHGVEER LKAVGDRLSQ LGDRLGVSLR FNVVASLRLG DISRESLGCG PDEPLAVNLA  420
FKLYRVPDES VCVENPRDEL LRRVKGLEPR VVTLVEQEMN SNTAPFLGRV SEACACYGAL  480
LDLVESSVPS SNLDRAKVEE GIGRKLINAV ACEGIDRIER CEVFGKWRMR MIMAGFELMP  540
LSEKIAESMK SRLGNGNRVH SGFTVKEDNG GVCFRWMGRT LAVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-3520058874473Protein SHORT-ROOT
5b3h_B2e-3520258822419Protein SHORT-ROOT
5b3h_E2e-3520258822419Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013615905.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615905.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0D3AMR00.0A0A0D3AMR0_BRAOL; Uncharacterized protein
STRINGBo2g047700.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8