PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013615897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 472aa MW: 52585.1 Da PI: 8.2604 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.4 | 3.1e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_013615897.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41 ****************88888***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.5E-10 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.57E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 1.49E-16 | 6 | 55 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 7 | 32 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.4E-13 | 7 | 40 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.2 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.3E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 1.9E-9 | 270 | 370 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHS RADGEENKDD 60 QRYQRMKSIS VNNKYKETKT LKRKAIQEPV LELNYGFKKA VVEEDASNRS SSGSAISNSE 120 SCAQFSSADG SELTGPSQSN GWDTTVPCKR RTCVGLRPKT SSVEKLTQDL YNILQEQQSS 180 VSSEEEDLLF ENEMLSMVSV EIGHGSVLMR NPHTFARGEV SEEASSLSSV ENKSSISDAY 240 SSHSMKRAEI GAERGSVSVG QVVKEEQLKR TKSQTGRVHV LGSHGAPLCS IDLKDIFNFD 300 EFIEQFTEEE QKKLMRLLPQ IDSVNLPDSL RMMFESAQFK ENFSLFQKLI ADGVFEMPST 360 SSEAKLEEMR SFKKLALSDF SKSRLVESYN LLKEGDKGSA TTSRSSNPNV HKHIVTIKRR 420 CENQTQLKSE SRGLMRSPKS VTKMKASHEG NGSCFSQRSL ASVFAQELLH QL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013615897.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353240 | 0.0 | AK353240.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-J12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013615897.1 | 0.0 | PREDICTED: GATA transcription factor 26 isoform X2 | ||||
Swissprot | Q8W4H1 | 0.0 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | A0A0D3A3U3 | 0.0 | A0A0D3A3U3_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g017650.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 0.0 | GATA transcription factor 26 |