PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013615849.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 145aa    MW: 16378.4 Da    PI: 9.1531
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013615849.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-1995145255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+ +++g
  XP_013615849.1  95 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFHTAEEAAMAYDKAAVRIRG 145
                     8********.**********44465..**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-2594145IPR001471AP2/ERF domain
PfamPF008472.8E-1295145IPR001471AP2/ERF domain
SMARTSM003802.5E-2295145IPR001471AP2/ERF domain
CDDcd000181.92E-2495145No hitNo description
SuperFamilySSF541715.49E-1995145IPR016177DNA-binding domain
PROSITE profilePS5103221.45695145IPR001471AP2/ERF domain
PRINTSPR003674.3E-1196107IPR001471AP2/ERF domain
PRINTSPR003674.3E-11119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
LKNVWENFIR KPETDTRSVH VQEVSTTWEA LPTLDDISKE SKGSLPTIDM SMEAKEWAEI  60
LDSIASFPSE TNHEPLTNPT GSRSLSSPVS CKTRKYRGVR RRPWGKFAAE IRDSTRNGVR  120
VWLGTFHTAE EAAMAYDKAA VRIRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2491145155ATERF1
3gcc_A9e-2491145155ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013615849.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615849.11e-104PREDICTED: ethylene-responsive transcription factor ERF091-like, partial
RefseqXP_013670494.11e-102ethylene-responsive transcription factor ERF091-like
SwissprotO495152e-77ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLA0A0D2ZZV61e-102A0A0D2ZZV6_BRAOL; Uncharacterized protein
TrEMBLA0A0D3A4391e-102A0A0D3A439_BRAOL; Uncharacterized protein
STRINGBo14558s010.11e-103(Brassica oleracea)
STRINGBo1g019600.11e-102(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.14e-69ERF family protein