PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013615817.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 132aa    MW: 15916.5 Da    PI: 10.4657
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013615817.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.92.1e-124586351
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                     +GV++ k + +W A I++      +++++lg+f + eeAa+++++a+ 
  XP_013615817.1 45 MRGVYY-K-NMKWQAAIKVE-----KRQIHLGTFSSQEEAARLYDRAAF 86
                    79**96.5.7*********6.....6********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.4533399IPR001471AP2/ERF domain
SMARTSM003803.6E-744101IPR001471AP2/ERF domain
PfamPF008476.6E-74487IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-104589IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-94691IPR001471AP2/ERF domain
CDDcd000188.27E-134697No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MSEMSNKELA NYFTFLFYLP FTDQPLKRRK RHRRKQVKNQ EPCLMRGVYY KNMKWQAAIK  60
VEKRQIHLGT FSSQEEAARL YDRAAFMCGR EPNFELSEED KRDLKQQSWE GFLACTRRKI  120
TNKSMLLLLK QP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013615817.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1336901e-102AY133690.1 Arabidopsis thaliana clone C103146 unknown protein (At4g13040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615817.12e-95PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP91e-53ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLM4F1E91e-75M4F1E9_BRARP; Uncharacterized protein
STRINGBra034895.1-P2e-76(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.26e-57ERF family protein