PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013615815.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 69aa MW: 7938.19 Da PI: 10.0296 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.7 | 6.1e-13 | 23 | 65 | 5 | 46 |
SHHHHHHHH.HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 5 nksnrqvtf.skRrngilKKAeELSvLCdaevaviifsstgkl 46 n+++ + +f R ++ilKKA ELS+LCd +++vi + +g+l XP_013615815.1 23 NQTRFKKSFlLLREKTILKKALELSILCDNDICVIHYDREGNL 65 4444444441349************************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 6.67E-10 | 17 | 66 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-8 | 35 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.377 | 35 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 69 aa Download sequence Send to blast |
MDSLSSSSTS TKMKNNNKLS VRNQTRFKKS FLLLREKTIL KKALELSILC DNDICVIHYD 60 REGNLVNAY |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013615815.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013615815.1 | 7e-43 | PREDICTED: agamous-like MADS-box protein AGL93, partial | ||||
Swissprot | Q7X9H9 | 5e-12 | AGL93_ARATH; Agamous-like MADS-box protein AGL93 | ||||
Swissprot | Q7X9N2 | 5e-12 | AGL53_ARATH; Agamous-like MADS-box protein AGL53 | ||||
TrEMBL | A0A0D2ZZ47 | 1e-41 | A0A0D2ZZ47_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6G4R6 | 9e-40 | A0A3P6G4R6_BRAOL; Uncharacterized protein | ||||
STRING | Bo11363s010.1 | 2e-42 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11759 | 7 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27090.2 | 6e-14 | AGAMOUS-like 54 |
Publications ? help Back to Top | |||
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