PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013615644.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 183aa MW: 20924.7 Da PI: 8.2084 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.8 | 4.3e-23 | 82 | 170 | 7 | 97 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++l+ + l lp++f++++g++++++ +++l++e+g+sW++ l +k sg++++++GW++F++an Lk+g + +Fkl++ s++++v+++f XP_013615644.1 82 WPSSLRYDTLNLPRSFVRSNGLETRCGGEIVLMNEKGKSWTLAL-KQKLSGSTYIRRGWRRFCSANVLKTGGVYTFKLIH-SGRTPVLRLF 170 567888999***********************************.5888899**************************99.8888999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.39E-7 | 1 | 34 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-16 | 1 | 50 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.166 | 1 | 37 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-10 | 1 | 44 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-21 | 69 | 167 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.63E-21 | 71 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.56E-18 | 76 | 170 | No hit | No description |
PROSITE profile | PS50863 | 14.734 | 76 | 173 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.4E-27 | 77 | 173 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-22 | 82 | 170 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
TDGWKEFAIA HDLRIGDILI FRQEKDMAFH VTLLGPSGCE FQYESCSEEE NNLGRNIPKK 60 KNLEREAESS SLDPSCFLAT IWPSSLRYDT LNLPRSFVRS NGLETRCGGE IVLMNEKGKS 120 WTLALKQKLS GSTYIRRGWR RFCSANVLKT GGVYTFKLIH SGRTPVLRLF FTESESESEE 180 RNF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013615644.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013615644.1 | 1e-134 | PREDICTED: B3 domain-containing protein REM14-like, partial | ||||
Swissprot | O23076 | 5e-68 | REM15_ARATH; Putative B3 domain-containing protein REM15 | ||||
TrEMBL | A0A397ZSF2 | 1e-123 | A0A397ZSF2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4ETE4 | 1e-117 | M4ETE4_BRARP; Uncharacterized protein | ||||
STRING | Bra032075.1-P | 1e-118 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 4e-69 | B3 family protein |
Publications ? help Back to Top | |||
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