PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013615580.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 599aa    MW: 68660.6 Da    PI: 8.4842
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013615580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.78.6e-1597178285
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt...sessstcpyfdql 85 
                     W+ +evlaL+++r+ +e+++ +       We  s+k++e g++rsp +Ckek+e+ ++ry + +++ ++++    +++ ++++f+++
  XP_013615580.1  97 WCSDEVLALLRFRSTVENWFPEF-----TWELTSRKLAEVGYKRSPRECKEKFEEEERRYFNSNNNTNDHHisnYNNKGNYRMFSEV 178
                     ********************998.....9*******************************999888887732223344466666665 PP
2trihelix99.62.5e-31451547186
        trihelix   1 rWtkqevlaLiearr.......emeerlr.....rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                     rW+++evlaLi++rr       +++++ +     +++++ plWe++skkm e g++rs+k+Ckekwen+nk++kk+k+ +kkr + +s+tcpyf+
  XP_013615580.1 451 RWPRDEVLALINIRRsissindDDHHKGGislssSSSKAVPLWERISKKMLESGYKRSAKRCKEKWENINKYFKKTKNVNKKR-PLDSRTCPYFH 544
                     8**************777766533333332222224699*******************************************8.9********** PP

        trihelix  84 qle 86 
                     ql+
  XP_013615580.1 545 QLT 547
                     *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.9E-1095161No hitNo description
PROSITE profilePS500905.55296148IPR017877Myb-like domain
CDDcd122034.37E-24450527No hitNo description
PfamPF138371.2E-19450548No hitNo description
PROSITE profilePS500906.829451520IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MFDGGVPEQI DQFIASPQPP PLLPPHQPAT ERSLPFPVSF ASFNSNHQAQ HMLSLDSRKI  60
IHHHHHHHGI KDGGVSSEWI GHTDHDGHNH RHFHHPWCSD EVLALLRFRS TVENWFPEFT  120
WELTSRKLAE VGYKRSPREC KEKFEEEERR YFNSNNNTND HHISNYNNKG NYRMFSEVEE  180
FYHHGHNDDE HVSSEVGDNQ NKRNNSLKGK ENVEEMGHNL LEEGKRDHQG QGQVEESSMG  240
NKINPVDNVR NEDGAKSSSS SSLMMIMRDK KKRKRKKKER FGVLKGFCEG LVRNMIVQQE  300
EMHKKLLEDM VKKEEEKMAR EEAWKKQEME RLNKEVEIRA NEQAMASDRN TSIIKFICKF  360
TGHDNHDDGN GMVQSPRPSQ DSSSLVLPKT QGRRKCQTSS SLLPQALTPH NPISLQSNDI  420
PLEPISTETL KTKTQNRKPP LSDEKSDTGK RWPRDEVLAL INIRRSISSI NDDDHHKGGI  480
SLSSSSSKAV PLWERISKKM LESGYKRSAK RCKEKWENIN KYFKKTKNVN KKRPLDSRTC  540
PYFHQLTALY SQPTTTATDT STGELETRVG SGDSVMHVDA NGAGEKSNVQ FSGFDLALP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269277KKKRKRKKK
2270275KKRKRK
3270277KKRKRKKK
4271277KRKRKKK
5272276RKRKK
6272278RKRKKKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013615580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615580.10.0PREDICTED: trihelix transcription factor GTL2-like
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A0D3AX600.0A0A0D3AX60_BRAOL; Uncharacterized protein
STRINGBo2g152980.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]