PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013615366.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 36480.8 Da PI: 5.2241 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.5 | 0.00028 | 160 | 198 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ N+++ +L++llP++ +K + + L +A++Y+ Lq XP_013615366.1 160 QTNDTNKKMRNLQDLLPNS-----QKDDNEALLDEAINYMTTLQ 198 24679*************9.....8***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-7 | 146 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.72E-4 | 146 | 202 | No hit | No description |
PROSITE profile | PS50888 | 9.521 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.15E-8 | 152 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MTSPSSSSYF RPKLTDQEYM ELVFENGQIL AKSQRSNGFS MHNQRTKSIV DLYEAEYNED 60 FKKTIHGADT SDKNLVDTQS LKASSSKRMV VDYENRKDIV PPDEQSVVAE RSVELGYDST 120 DFTEDSEEST YQSSRLDDVR PQVPARTSNV LVKRRRKQKQ TNDTNKKMRN LQDLLPNSQK 180 DDNEALLDEA INYMTTLQHQ VQMMTMGNRF VTPATMLPLG PQYSQMGLAT GMQMGVPQLL 240 PAPVLGAGLP LVSTSADVLR VLNHPVGPVL MPIQNSALFT PTENYLPQSV PPAYAAFPNQ 300 IPNSTTSSNL DDARTHGGNL SGKESDKP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 158 | VKRRRKQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013615366.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC172877 | 1e-152 | AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013605866.1 | 0.0 | PREDICTED: transcription factor PIF6 isoform X4 | ||||
Refseq | XP_013615366.1 | 0.0 | PREDICTED: transcription factor PIF6-like isoform X4 | ||||
Swissprot | Q8L5W7 | 1e-136 | PIF6_ARATH; Transcription factor PIF6 | ||||
TrEMBL | A0A0D3DV12 | 0.0 | A0A0D3DV12_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FJ66 | 0.0 | A0A3P6FJ66_BRAOL; Uncharacterized protein | ||||
STRING | Bo02373s010.1 | 0.0 | (Brassica oleracea) | ||||
STRING | Bo8g097630.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62090.2 | 1e-127 | phytochrome interacting factor 3-like 2 |