PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013615364.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 352aa MW: 39163 Da PI: 4.9654 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.3 | 0.00032 | 185 | 222 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ N+++ +L++llP++ +K + + L +A++Y+ Lq XP_013615364.1 185 TNDTNKKMRNLQDLLPNS-----QKDDNEALLDEAINYMTTLQ 222 4679*************9.....8***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-7 | 170 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.84E-4 | 170 | 226 | No hit | No description |
PROSITE profile | PS50888 | 9.521 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-8 | 176 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MTSPSSSSYF RPKLTDQEYM ELVFENGQIL AKSQRSNGFS MHNQRTKSIV DLYEAEYNED 60 FKKTIHGADT SDKNLVDTQV VPEPLVVAAY ETNMLMNQLN LIQSLKASSS KRMVVDYENR 120 KDIVPPDEQS VVAERSVELG YDSTDFTEDS EESTYQSSRL DDVRPQVPAR TSNVLVKRRR 180 KQKQTNDTNK KMRNLQDLLP NSQKDDNEAL LDEAINYMTT LQHQVQMMTM GNRFVTPATM 240 LPLGPQYSQM GLATGMQMGV PQLLPAPVLG AGLPLVSTSA DVLRVLNHPV GPVLMPIQNS 300 ALFTPTENYL PQSVPPAYAA FPNQIPNSTT SSNLDDARTH GGNLSGKESD KP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 175 | 182 | VKRRRKQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013615364.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC172877 | 0.0 | AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013605864.1 | 0.0 | PREDICTED: transcription factor PIF6 isoform X2 | ||||
Refseq | XP_013615364.1 | 0.0 | PREDICTED: transcription factor PIF6-like isoform X2 | ||||
Refseq | XP_013712403.1 | 0.0 | transcription factor PIF6-like isoform X2 | ||||
Refseq | XP_022564170.1 | 0.0 | transcription factor PIF6-like isoform X2 | ||||
Swissprot | Q8L5W7 | 1e-146 | PIF6_ARATH; Transcription factor PIF6 | ||||
TrEMBL | A0A0D3DV12 | 0.0 | A0A0D3DV12_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FJ66 | 0.0 | A0A3P6FJ66_BRAOL; Uncharacterized protein | ||||
STRING | Bo02373s010.1 | 0.0 | (Brassica oleracea) | ||||
STRING | Bo8g097630.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62090.2 | 1e-137 | phytochrome interacting factor 3-like 2 |