PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013615277.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 129aa MW: 14906.8 Da PI: 4.9573

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013615277.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	35.9	2.3e-11	5	61	2	62
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFs 62 p+Gfr +P deel+++y k+++ g++ l++ i+e++iy++eP Lp+++ ke y F XP_013615277.1 5 PVGFRSSPMDEELINFYQKNRILGNSWLLDDSISEINIYSYEPAFLPEEA----KEDYTFW 61 89**********************999999*************543....3333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-12	3	70	IPR003441	NAC domain
PROSITE profile	PS51005	13.349	4	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MKNYPVGFRS SPMDEELINF YQKNRILGNS WLLDDSISEI NIYSYEPAFL PEEAKEDYTF 60 WVLESYDRKI KDKGTLDLLF PRESSPVRDS PNFIPSNPPP PLGRHSSLPR LTVRSAVTSV 120 REGAWKLEP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269\|PubMed:21450938}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013615277.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269\|PubMed:21450938}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013615277.1	2e-89	PREDICTED: NAC domain-containing protein 69-like isoform X2
Swissprot	Q9M126	9e-14	NAC69_ARATH; NAC domain-containing protein 69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	5e-16	NAC domain containing protein 69

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] He L, et al. Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance. Plant Mol. Biol., 2017. 93(4-5): p. 369-387 [PMID:27975189]