PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013615265.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 1299aa MW: 146830 Da PI: 5.2806

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013615265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00048	371	392	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 ++C +C++ F++++++++Hi XP_013615265.1 371 WVCCKCSEKFKDSESYMQHIVG 392 58*****************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.10	2.8E-7	45	163	IPR011990	Tetratricopeptide-like helical domain
SuperFamily	SSF48452	2.4E-7	52	160	IPR011990	Tetratricopeptide-like helical domain
Pfam	PF04781	1.9E-27	52	160	IPR006866	Domain of unknown function DUF627, N-terminal
Pfam	PF04780	8.2E-180	315	841	IPR006865	Domain of unknown function DUF629
PROSITE pattern	PS00028	0	373	394	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1299 aa Download sequence Send to blast
MGQKKKPPAP RSKQSLSSSA AEAEPSSEVS ACTSYDGDEP SNLAEIKVEC EKALTSFRRG 60 SYNKAIRLMK ESCSRHQHSA LIHRVQGTVC VKVSSVYEDA VTKQKYIRSA IESARKAVEL 120 SPNSIEFAHF YANLLYEAAS DGREYEEVLQ ECHRALSIEN PIDPAKDSLQ DESQHKILTP 180 EARIANVQDE LRSLIQKSNL GSLSTWMKHL RNGEGEFRLF DMRKMAEDPI ESNLVQTRRP 240 NEIKKATKTL EERRKEIEVR VAAGRLLQQK SESSSVDSVN SKGSDPALGS GQRSVERRKH 300 GNARKNDSTV ERRDRVRSYW ESTGKEMKKE LLRIKVSDLK SHFSASKDGD ANDIITEALS 360 FCEANKTWRF WVCCKCSEKF KDSESYMQHI VGEHIGNVLP KMQMVLPQSL DSERIEMLLT 420 SPWKPLDFPA AVKLRCSQQK IQNTEFNEFY AEDYMDDGDD CFQDAWNDTS PEKEKIGDAC 480 NGYEKNESEK GRLPNPFYLP DEWPISDDPE RTKLLKSIRA AFELLIKHSY LATSHYDKVI 540 QFTLDELRNL PSVSQFLNRG LCQSPICIRF LGASQLKKIL QFLQDLSHAC GVSRYSEQSN 600 PNDEVNNFVD LGLQITEEIC LDGEGSCLLL DEKLLGSECI QDKHMGSALN NGDIASSEDI 660 ANGNNVSSGA DGFLSWIFSG PSSGEQTAIW MRTVEEKTNQ GQKTMEILEK EVYDLQNLFE 720 RKCEHLSYEG ALQTVEDLCL EKGRKRETSP DFTHESYESV LRKRREELNE SAHEMEFISS 780 SFELEAIKNV LRDADTLNCN QFGYEESYTC TSSQLRDLES GEADEWGMKY SFSEADSFIE 840 TAIQKQKEQL STELNRIDAR MMRGATVVQQ LELKLGPASS NDYQIVMLPL VRSYMRAHLE 900 ALAEKDATEK SDAASKAFLV ELALDSKKEA RGRNDHSKHT QEKPKDKKKN KHSKKLKDSK 960 ASVGNDHRFN VDSVEHSLPS IASFGDPSEA DVVPEAVESL KEQEEECRRR TELELDEIKL 1020 EETLEYQRRI EDEAKGKHIA EQQKKYSSLV TTSDAEAVHD ICRDGVVVDL DLREQEKSLS 1080 QENLVQRNGL PHDLDVTHVY RNGDSRSTNH CEISDAATVQ DVKSQKVVAN GVATQAGVLQ 1140 SDQRIGRRGR RQKTSNKVVG PSESTGKERE SETLRSNGDV GTKTLKQLQA EEDEEEKFQA 1200 DLKKAVRQSL DTYQGGRNMT SCLRTPLEVN SHEISDSTKE SPTSTEVGIF GTGLQNEVGE 1260 YNCFLNVIIQ SLWNLGVFRA EFLRSSMLDH RNIHSQKLF

Sequence ? help Back to Top

Protein Sequence Length: 1299 aa Download sequence Send to blast

MGQKKKPPAP RSKQSLSSSA AEAEPSSEVS ACTSYDGDEP SNLAEIKVEC EKALTSFRRG  60
SYNKAIRLMK ESCSRHQHSA LIHRVQGTVC VKVSSVYEDA VTKQKYIRSA IESARKAVEL  120
SPNSIEFAHF YANLLYEAAS DGREYEEVLQ ECHRALSIEN PIDPAKDSLQ DESQHKILTP  180
EARIANVQDE LRSLIQKSNL GSLSTWMKHL RNGEGEFRLF DMRKMAEDPI ESNLVQTRRP  240
NEIKKATKTL EERRKEIEVR VAAGRLLQQK SESSSVDSVN SKGSDPALGS GQRSVERRKH  300
GNARKNDSTV ERRDRVRSYW ESTGKEMKKE LLRIKVSDLK SHFSASKDGD ANDIITEALS  360
FCEANKTWRF WVCCKCSEKF KDSESYMQHI VGEHIGNVLP KMQMVLPQSL DSERIEMLLT  420
SPWKPLDFPA AVKLRCSQQK IQNTEFNEFY AEDYMDDGDD CFQDAWNDTS PEKEKIGDAC  480
NGYEKNESEK GRLPNPFYLP DEWPISDDPE RTKLLKSIRA AFELLIKHSY LATSHYDKVI  540
QFTLDELRNL PSVSQFLNRG LCQSPICIRF LGASQLKKIL QFLQDLSHAC GVSRYSEQSN  600
PNDEVNNFVD LGLQITEEIC LDGEGSCLLL DEKLLGSECI QDKHMGSALN NGDIASSEDI  660
ANGNNVSSGA DGFLSWIFSG PSSGEQTAIW MRTVEEKTNQ GQKTMEILEK EVYDLQNLFE  720
RKCEHLSYEG ALQTVEDLCL EKGRKRETSP DFTHESYESV LRKRREELNE SAHEMEFISS  780
SFELEAIKNV LRDADTLNCN QFGYEESYTC TSSQLRDLES GEADEWGMKY SFSEADSFIE  840
TAIQKQKEQL STELNRIDAR MMRGATVVQQ LELKLGPASS NDYQIVMLPL VRSYMRAHLE  900
ALAEKDATEK SDAASKAFLV ELALDSKKEA RGRNDHSKHT QEKPKDKKKN KHSKKLKDSK  960
ASVGNDHRFN VDSVEHSLPS IASFGDPSEA DVVPEAVESL KEQEEECRRR TELELDEIKL  1020
EETLEYQRRI EDEAKGKHIA EQQKKYSSLV TTSDAEAVHD ICRDGVVVDL DLREQEKSLS  1080
QENLVQRNGL PHDLDVTHVY RNGDSRSTNH CEISDAATVQ DVKSQKVVAN GVATQAGVLQ  1140
SDQRIGRRGR RQKTSNKVVG PSESTGKERE SETLRSNGDV GTKTLKQLQA EEDEEEKFQA  1200
DLKKAVRQSL DTYQGGRNMT SCLRTPLEVN SHEISDSTKE SPTSTEVGIF GTGLQNEVGE  1260
YNCFLNVIIQ SLWNLGVFRA EFLRSSMLDH RNIHSQKLF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	743	764	RKRETSPDFTHESYESVLRKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013615265.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013615265.1	0.0	PREDICTED: uncharacterized protein LOC106321558
TrEMBL	A0A3P6AXQ0	0.0	A0A3P6AXQ0_BRAOL; Uncharacterized protein
STRING	Bra018101.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2940	3	6