PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013615000.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 202aa    MW: 23143.9 Da    PI: 5.3923
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013615000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.5e-152979155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    + ++G+r++    +Wv+e+r+p     +  +r++lg++ ta++Aa+a++ a+++l+g
  XP_013615000.1 29 PVFRGIRRRN-GDKWVCEVREP-----ThqQRIWLGTYPTADMAARAHDVAALALRG 79
                    579****877.9*********8.....336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-102979IPR001471AP2/ERF domain
PROSITE profilePS5103221.0873087IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-193089IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-283089IPR001471AP2/ERF domain
SMARTSM003807.7E-233093IPR001471AP2/ERF domain
CDDcd000184.54E-243189No hitNo description
PRINTSPR003679.6E-73142IPR001471AP2/ERF domain
PRINTSPR003679.6E-75369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDHYDGTNLA EMRPKRRAGR KVFNETRHPV FRGIRRRNGD KWVCEVREPT HQQRIWLGTY  60
PTADMAARAH DVAALALRGR SACLNFGDSA WRLPVPESNH PDVIRRVAAE AAEMFRPAEY  120
GSEITVLPSY GSEVYMGSGS GSDERNVYGY VEEEEEVSTT MMRLATEPLM SPPRSYMEGV  180
TPNGYMEEEM SYEDMSLWSY RY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013615000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0135960.0KJ013596.1 Brassica rapa subsp. chinensis CBF6C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615000.11e-149PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotQ9LN861e-104DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA0A078GXR71e-147A0A078GXR7_BRANA; BnaC08g15650D protein
TrEMBLA0A0D2ZUP71e-147A0A0D2ZUP7_BRAOL; Uncharacterized protein
STRINGBo01335s010.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.12e-81ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]