PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614989.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 311aa    MW: 35309.7 Da    PI: 6.9486
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.96.8e-5651301128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL++kv+++ ++  +++ +vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ 
  XP_013614989.1   5 LPPGFRFHPTDEELITHYLCRKVSDTGFTG-KAVVDVDLNKCEPWDLPAKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIYR- 97 
                     79*************************999.88***************999999****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +g lvg+kktLvfykgrapkgek++Wvmheyrl
  XP_013614989.1  98 SGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRL 130
                     999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-643151IPR003441NAC domain
PROSITE profilePS5100560.0715151IPR003441NAC domain
PfamPF023655.7E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT HYLCRKVSDT GFTGKAVVDV DLNKCEPWDL PAKASMGEKE  60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRSGV LVGMKKTLVF YKGRAPKGEK  120
SNWVMHEYRL GNKQPFTPAK EEWVVCRVFE KSTAIKKPQE QQPQSSFGSP CDANSSMANE  180
FEDIELPNLN SNSSTFGYNH IHDHQYPQTS VYSEDNITSA AGLNMNMNMN MNMATNIPSW  240
TTSLLAPPLS PINSLLLKAF QIRNSYSFPK EMVSNIHPSL HQQGASNIMQ NGSSSPQPQP  300
QEEAFNMDSI W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-58415716171NO APICAL MERISTEM PROTEIN
1ut4_B6e-58415716171NO APICAL MERISTEM PROTEIN
1ut7_A6e-58415716171NO APICAL MERISTEM PROTEIN
1ut7_B6e-58415716171NO APICAL MERISTEM PROTEIN
4dul_A6e-58415716171NAC domain-containing protein 19
4dul_B6e-58415716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614989.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266581e-110AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24.
GenBankCP0026861e-110CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614989.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ29e-81NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0D2ZUM80.0A0A0D2ZUM8_BRAOL; Uncharacterized protein
STRINGBo01320s020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-178NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]