PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614924.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 782aa    MW: 90018.8 Da    PI: 6.7175
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614924.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-093366337
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                      WT++E e++++a +++G + Wk++a+ + ++R+ 
   XP_013614924.1 33 QWTKDELERFYEAYQKHGRD-WKKVAASVENNRSV 66
                     6*****************77.*******9988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004335.0E-65288IPR001241DNA topoisomerase, type IIA
PROSITE profilePS512939.6172987IPR017884SANT domain
SMARTSM007170.00663079IPR001005SANT/Myb domain
SuperFamilySSF466894.34E-83276IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-53365IPR009057Homeodomain-like
PfamPF002495.4E-83369IPR001005SANT/Myb domain
CDDcd001679.86E-43469No hitNo description
Gene3DG3DSA:3.40.50.6702.3E-23133211IPR013759DNA topoisomerase, type IIA, central domain
SuperFamilySSF567191.31E-149135755IPR013760DNA topoisomerase, type IIA-like domain
PRINTSPR004182.8E-19143159IPR001241DNA topoisomerase, type IIA
PRINTSPR004182.8E-19161178IPR001241DNA topoisomerase, type IIA
PRINTSPR011586.7E-43162177IPR001154DNA topoisomerase II, eukaryotic-type
PRINTSPR004182.8E-19183195IPR001241DNA topoisomerase, type IIA
PfamPF168983.3E-32188317IPR031660C-terminal associated domain of TOPRIM
Gene3DG3DSA:3.30.1490.301.0E-14212246No hitNo description
PRINTSPR004182.8E-19228244IPR001241DNA topoisomerase, type IIA
PRINTSPR011586.7E-43234246IPR001154DNA topoisomerase II, eukaryotic-type
SMARTSM004341.6E-78300748IPR002205DNA topoisomerase, type IIA, subunit A/C-terminal
PfamPF005211.9E-98320751IPR002205DNA topoisomerase, type IIA, subunit A/C-terminal
Gene3DG3DSA:3.90.199.104.1E-52322507IPR013758DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta
PRINTSPR011586.7E-43348371IPR001154DNA topoisomerase II, eukaryotic-type
PRINTSPR011586.7E-43395417IPR001154DNA topoisomerase II, eukaryotic-type
Gene3DG3DSA:3.30.1360.404.0E-16508609IPR024946Arginine repressor C-terminal-like domain
PRINTSPR011586.7E-43537551IPR001154DNA topoisomerase II, eukaryotic-type
PRINTSPR011586.7E-43619645IPR001154DNA topoisomerase II, eukaryotic-type
Gene3DG3DSA:1.10.268.104.2E-23626759IPR013757Type IIA DNA topoisomerase subunit A, alpha-helical domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006265Biological ProcessDNA topological change
GO:0003677Molecular FunctionDNA binding
GO:0003918Molecular FunctionDNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MSSENSMNAN KNFNKEASPQ SKTKKLKKKL GPQWTKDELE RFYEAYQKHG RDWKKVAASV  60
ENNRSVDMVE ALFSMNQPYL SLPEASVDGL AAIMTAHYSL FEETESKGEG HDASGWLDSL  120
LCKEKLTGFI LCKDETSYTT TDSLRYKHVM IMTDQDEDGV HIKGLLINFF HHNWPQLLKL  180
NPPFLSEFRT PIVKVKNRNG VEAKSFYSMA EYSEWKEQEA DNLSKWETTH YKGLGTHTSE  240
EGCEYFKHID NHKRVFVCDD DKDHGVAIDG AFNGNSKYRK EMLENFDPNS HHHETEARQI  300
TFTDFIEKDL ASFFMANMKR SVPSMLDGLK PGQRKILHCL LKRSSNEDIK VSQVSALVLT  360
HCDYYHSEKA LNNTIIKMAQ HHVGSNNLPL LQSLGQFGTR IAGGQDAADP RYLRTKLSPE  420
TRILFPKEDD KYADALTGSL NVEDRKNTEP TPYYPIVPMV LVNGCRGIAS GWSTFIPNYK  480
LKDVISNVER LLNDERTEPM DPWYEGFEGT ITKDGENRYK TFGRLEESSG NAETRLVTEL  540
PIEVWTNNYV SSLDKGKENR GKVSAFIENY LDRSNDTTVS IQIELKKTEK KMTPEEEKEI  600
LGLTTMLSTG NMYLFDENDM IKKYESPQEI IEDFYKSRLK AYNKRKKHML MELEEELKKL  660
QCRVAFVTDV MNGEFKFDIK RSRAQLYEEV KGKYEATGRG LTDYSFLLDL SFLSCSKETL  720
QDLQDARENV NRKIIEVETL TPKAIWKSEL QKLRDVTEIS MSSKLKRTRS PGSTSSEKER  780
KR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3qx3_A1e-131125775110790DNA topoisomerase 2-beta
3qx3_B1e-131125775110790DNA topoisomerase 2-beta
4g0u_A1e-131125775110790DNA topoisomerase 2-beta
4g0u_B1e-131125775110790DNA topoisomerase 2-beta
4g0v_A1e-131125775110790DNA topoisomerase 2-beta
4g0v_B1e-131125775110790DNA topoisomerase 2-beta
4g0w_A1e-131125775110790DNA topoisomerase 2-beta
4g0w_B1e-131125775110790DNA topoisomerase 2-beta
4j3n_A1e-131125775110790DNA topoisomerase 2-beta
4j3n_B1e-131125775110790DNA topoisomerase 2-beta
5gwi_A1e-131125775110790DNA topoisomerase 2-beta
5gwi_B1e-131125775110790DNA topoisomerase 2-beta
5gwj_A1e-131125775110790DNA topoisomerase 2-beta
5gwj_B1e-131125775110790DNA topoisomerase 2-beta
5zad_A1e-131125775110790DNA topoisomerase 2-beta
5zad_B1e-131125775110790DNA topoisomerase 2-beta
5zen_A1e-131125775110790DNA topoisomerase 2-beta
5zqf_A1e-131125775110790DNA topoisomerase 2-beta
5zrf_A1e-131125775110790DNA topoisomerase 2-beta
5zrf_B1e-131125775110790DNA topoisomerase 2-beta
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1635646KSRLKAYNKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614924.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614924.10.0PREDICTED: DNA topoisomerase 2-like
TrEMBLA0A0D2ZUH60.0A0A0D2ZUH6_BRAOL; DNA topoisomerase 2
STRINGBo01274s030.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.27e-18DNA binding