PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013614922.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 179aa MW: 20256 Da PI: 7.658 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 32 | 65 | 3 | 37 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 WT++E e++++a +++G + Wk++a+ + ++R+ XP_013614922.1 32 QWTKDELERFYEAYQKHGRD-WKKVAASVENNRSV 65 6*****************77.*******9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-6 | 22 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.617 | 28 | 86 | IPR017884 | SANT domain |
SMART | SM00717 | 0.0066 | 29 | 78 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.71E-9 | 31 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-9 | 32 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.05E-5 | 33 | 68 | No hit | No description |
Gene3D | G3DSA:3.40.50.670 | 1.3E-10 | 120 | 168 | IPR013759 | DNA topoisomerase, type IIA, central domain |
SuperFamily | SSF56719 | 2.54E-10 | 130 | 168 | IPR013760 | DNA topoisomerase, type IIA-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006265 | Biological Process | DNA topological change | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003918 | Molecular Function | DNA topoisomerase type II (ATP-hydrolyzing) activity | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MSGVKNQKPR LYVKFSAPVV KEDCKKKKLG PQWTKDELER FYEAYQKHGR DWKKVAASVE 60 NNRSVDMVEA LFSMNQPYLS LPEASVDGLA AIMTAHYSLF EETESKGEGH DASGVTRGFP 120 IKKLHDAEDL DKQCTLILTE GDSAKHLVMA GLSSLQRKTY GVYPLQGRDE LHYNRFAEI |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013614922.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013614922.1 | 1e-133 | PREDICTED: protein ALWAYS EARLY 2-like | ||||
Swissprot | Q6A333 | 5e-36 | ALY2_ARATH; Protein ALWAYS EARLY 2 | ||||
TrEMBL | A0A0D2ZUH5 | 4e-90 | A0A0D2ZUH5_BRAOL; DNA topoisomerase 2 | ||||
STRING | Bo01274s020.1 | 7e-91 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21251 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 3e-26 | DNA binding |
Publications ? help Back to Top | |||
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