PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013614593.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 291aa MW: 32864.2 Da PI: 6.6784 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.7 | 1.7e-07 | 241 | 273 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp+++++++L +++gL+ +q+ +WF N+R + XP_013614593.1 241 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 273 58*****************************87 PP | |||||||
2 | ELK | 22.7 | 2.3e-08 | 194 | 215 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ XP_013614593.1 194 ELKLELKQGFKSRIEDVREEIM 215 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.7E-19 | 28 | 72 | IPR005540 | KNOX1 |
Pfam | PF03790 | 9.7E-17 | 30 | 71 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.7E-20 | 82 | 135 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.6E-15 | 86 | 134 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.202 | 194 | 214 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.823 | 214 | 277 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.44E-16 | 216 | 280 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.3E-11 | 216 | 281 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.28E-12 | 217 | 278 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-25 | 221 | 279 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.2E-18 | 234 | 273 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MEEATLGMIG PTVGGGDGEA AVAAEQNRQM KGEIASHPMY EQLLAAHVAC LRVATPIDQL 60 PIIEAQLSHS HRLLRSYASI AIGFSHHDRQ ELDNFLYVMV LCSFKEQLQQ HVRVHAVEAV 120 MACREIENNL HSLTGATLGE GSGATMSEDE EDLHMDFSSD TSGVGFSGGH DMTGFGPLLP 180 TESERSLMER VRQELKLELK QGFKSRIEDV REEIMRKRRA GKLPGDTTTV LKNWWQQHCK 240 WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSH SLTSLKSKRK H |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013614593.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | Z29073 | 0.0 | Z29073.1 B.napus hd1 mRNA for homeodomain-containing protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013614593.1 | 0.0 | PREDICTED: homeobox protein HD1-like isoform X2 | ||||
Swissprot | Q9FPQ8 | 0.0 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A3P6C749 | 0.0 | A0A3P6C749_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g028790.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 0.0 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Publications ? help Back to Top | |||
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