PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614592.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 293aa    MW: 33091.4 Da    PI: 6.6784
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614592.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-072432752254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_013614592.1 243 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 275
                     58*****************************87 PP
2ELK22.72.3e-08196217122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK +L++++++++ ++++E++
  XP_013614592.1 196 ELKLELKQGFKSRIEDVREEIM 217
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.7E-192872IPR005540KNOX1
PfamPF037909.8E-173071IPR005540KNOX1
SMARTSM012561.7E-2382137IPR005541KNOX2
PfamPF037913.3E-1986136IPR005541KNOX2
PROSITE profilePS512139.202196216IPR005539ELK domain
PROSITE profilePS5007111.823216279IPR001356Homeobox domain
SuperFamilySSF466892.48E-16218282IPR009057Homeodomain-like
SMARTSM003896.3E-11218283IPR001356Homeobox domain
CDDcd000863.55E-12219280No hitNo description
Gene3DG3DSA:1.10.10.605.0E-25223281IPR009057Homeodomain-like
PfamPF059203.3E-18236275IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEEATLGMIG PTVGGGDGEA AVAAEQNRQM KGEIASHPMY EQLLAAHVAC LRVATPIDQL  60
PIIEAQLSHS HRLLRSYASI AIGFSHHDRQ ELDNFLVQYV MVLCSFKEQL QQHVRVHAVE  120
AVMACREIEN NLHSLTGATL GEGSGATMSE DEEDLHMDFS SDTSGVGFSG GHDMTGFGPL  180
LPTESERSLM ERVRQELKLE LKQGFKSRIE DVREEIMRKR RAGKLPGDTT TVLKNWWQQH  240
CKWPYPTEDD KAKLVEETGL QLKQINNWFI NQRKRNWHNN SHSLTSLKSK RKH
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614592.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ290730.0Z29073.1 B.napus hd1 mRNA for homeodomain-containing protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614592.10.0PREDICTED: homeobox protein HD1-like isoform X1
SwissprotQ9FPQ80.0KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A3P6C7490.0A0A3P6C749_BRAOL; Uncharacterized protein
STRINGBo9g028790.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.10.0KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]