PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614575.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 460aa    MW: 50063.4 Da    PI: 6.7511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614575.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.38.4e-063513891154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ ++++ L++l+ +      +K + a++L +A+eYIk L
  XP_013614575.1 351 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 389
                     5778999***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.735340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0075346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.12E-6350394No hitNo description
SuperFamilySSF474593.66E-11350404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-10354398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MGDHHDFINS GSWWKVSSSS SISSSSSMRA NSNESGGSAV FHDKLHHQDH HSLATDHHLQ  60
MIGLGLSSQS PVDQWNQSLL GDSKAETSFG VMLQENLNLD ATSNANANTT SSTTSYQLQE  120
SDSSHHQALW RDPHINNNDF KPQLNMTSSN RGFFSDHHQF SPHGSSSTDS STVTCQGFSI  180
DNSTNTMYGT STTPNSSSAM FHQHQGAGYN LPGSSEQQLS RNHQQSNLGY SQFGSSTGNY  240
DQIATALPST WFLRSSPPKP HSPLRFSNNA TFWNPAATAG NVGPTQHDAS SNFLPAIRPP  300
QLHRPSFEEQ PKSVSEIRDS SSSDVKRGGG DQPAAKRAKS EAASPSPAFK VRKEKMGDRI  360
AALQQLVSPF GKTDAASVLS EAIEYIKFLH QQVSALSNPY MKSGASLQHQ QSDHPKELDV  420
SEEPDLRSRG LCLVPVSSTF PVTHDTTVDF WTPTFGGTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614575.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180540.0AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.
GenBankBT0085800.0BT008580.1 Arabidopsis thaliana clone U50947 unknown protein (At3g20640) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614575.10.0PREDICTED: transcription factor bHLH123-like isoform X2
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0D2ZTA40.0A0A0D2ZTA4_BRAOL; Uncharacterized protein
STRINGBo01052s010.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]